<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00353

Description Uncharacterized protein
SequenceMGSEGGGDGRGGAEAAEFERLVSEAMEQCRARGEAPAVWSAEVAKCVVSRGLELPSAELGQVLVSHLSSNFGEPSLWKFLDYAMASRLISSLHVLCLLTPRVLSCRQGQPEAYRLYLDLLARYTFCPEDFPSKASRDKIVRAIDANLQLSRIYGINVGELGQTLVIFFFSTIVSLIDSTMDDWGLQIASVGGLSGSFGSMEHHQRNVDIRGGRDYRRSGHREYIRNTNSLIAMEVLENLTRSRKALALLRLVHKDMPDKFNGLLQRLQFLETCKLPSPNLISAKEVLARLSSNIHKVLAFESDLKRSFIGMFLDMKSNKSVPCSDSPSALSACWVPFDLYMETAMDARLLPETSATAILTELTVTLQTLNRASWQETFLALWLSALRLVQRERDPPEGPIPHLETRLCILLCIVPLAIPGVLMDDIDLSYTSSCDLSASILSDPGHGHMIDEKVHELRRNGFISSLQLLGQFSGLLYPPELVQDSANSAAAKAAVFTSKQMNGSDSISVGDHDVLVKCGGNMWHLIVEACIARRLIDTSAYFWPGYVHTSVLSIPDSSMKEMSPWSAFMEGGVLTASLISSLVATPATSFSEIEKLYYVAMNGSNEEKSAAARIICGASLSRGWNIQSYFVDSMPMLSAILFGASSIDTVHILSLHGAVPEVAAALMPFCEVYGSLNPLSSSESRTSEEPSVYMVFSAAFLLLLRLWKFYKPPLEGGGTIEAALTLEHLMLLHNSHISLASQDFAPQNEVNSSMNQTFFASDEPVYIDNYPRLRAWYNQNRSCVASPLSNLCSGSPVHQVANKILSMIYWKMTGSTSSSGNSSMTLTSSSLGGSPTSAGEEPYQRPVLCAWEVLEAIPFVLEAILTACAHGKLSSRDLTTGLRDLIDFLPASLAIIISYFSAEVTRGIWGPVPMNGIDWPSPTQTIRSVESEIKEILAAAGVQTPSYYPGVATTLPLPMAALVSLTITFKLDKSLEYLLAVAGPSMENCASYCPWPSIPIFGSLWAQKVRRWHNFIVVMCSQSVFRQNKEALAQLVRSCFTSFLGPLDDLSSPLTNQPCINRLLGSKISAHGVPPLMAPGFLYLRSCRFVQDKQHLSETILRLVVEYGSKLATRWAETSSSHLKSGQASLSIAAARIREVGLLGASLLASAGGLHLAQDLFRGIIPTWLLTIREEKHGEETFASRMFEGYAMAYFAYLMGTFLFGSRVKAAPCAHARRSRIFGMHMDFMARVLVGNVPLGCHPVSWKAYISCLVGLVVSFSPAWVREVKHETLVRLARGLWGWHECELALALLERGGFATVGPLAEFFSVMD
Length1312
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.09
Grand average of hydropathy0.129
Instability index48.32
Isoelectric point6.22
Molecular weight143814.13
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.20|      39|     253|     180|     219|       1
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  180-  219 (68.78/53.11)	MDDWGLQIASVGGLSGSFGSMEHHQRNVDIRgGRDYRRSG
  423-  461 (71.42/49.86)	MDDIDLSYTSSCDLSASILSDPGHGHMIDEK.VHELRRNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.25|      48|     253|    1001|    1052|       2
---------------------------------------------------------------------------
 1001- 1052 (71.40/55.15)	FGSLWAQKVRrwHNFIVVMcSQSV..FRQNKEALAQLVRSCFTSfLGPLDDLSS
 1260- 1309 (79.85/44.58)	FSPAWVREVK..HETLVRL.ARGLwgWHECELALALLERGGFAT.VGPLAEFFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.30|      21|     253|      79|      99|       3
---------------------------------------------------------------------------
   79-   99 (36.58/22.72)	FLDYAMASRLI...SSLHVLCLLT
  340-  363 (29.72/17.03)	YMETAMDARLLpetSATAILTELT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.91|      16|      98|      49|      64|       4
---------------------------------------------------------------------------
   40-   55 (28.36/19.75)	SAEVAKCVVSR...GLELP
   56-   74 (22.55/13.99)	SAELGQVLVSHlssNFGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.54|      60|      97|     464|     554|       5
---------------------------------------------------------------------------
  464-  525 (99.03/122.77)	SSLQLLGQFSGLLYPPELVQDSANS.AAAKAAVFTSKQ......MNGSDSISVGDHDVLvkCGGNM...WHL
  557-  626 (86.51/48.20)	SSMKEMSPWSAFMEGGVLTASLISSlVATPATSFSEIEklyyvaMNGSNEEKSAAARII..CGASLsrgWNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.29|      14|     100|     812|     864|      13
---------------------------------------------------------------------------
  760-  776 (20.81/28.74)	ASDEPvYidNYPRLRAW
  838-  851 (30.48/19.93)	AGEEP.Y..QRPVLCAW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00353 with Med33 domain of Kingdom Viridiplantae
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