<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00351

Description Uncharacterized protein
SequenceMDQPPQRWSSASRAYQFHPSSAAINDLFNLYLVRNSHHRADDSVREPPNNAQKHVVDLPPQNDQFIVDFQQLQNQFADRDQLRSMTESVLISLVVQCSGHAPRAEFLLFALRSLCGIGYINWDTFLPSLLSSVSSAERDSVVSSLRQLCCKIILIGLDFNLKPVTHSDIFSHMLNWLVNWDQGQNRMDESDVIMSWRPDKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTQRILTLTTPNVSGEAVGNLRYSPITYPSVLGEPLNGEELATSKVRGSLDWERALRCIRHAIRTAPSLDWWKRVLLVAPCYRPSGQPPSPGAVFTSEMICEATIDRIIELLKLTNSDINCWSEWLIFSDIFFFLMKSGCIDFVDFVGKLVVRLTEGDQQILRTNHVTWLLAEIIRIELVVNALNSDSRKVETIRKILSFHREDRGSDPNNPQSILLDFISSCLTLRIWSLNTATREYLNNEQLQKGKQIDEWWRQVGKDRMMDYMNMDERSIGMFWVVSYTMAQPAYDTVMNWLSSAGVTELLPGSNMPNERVMREVSPIPMTLISGFSMNLCLKLAFQMEEALFSNQVVPSIAMVETYTRLLLTAPQCDMTMSHFLQHLAQRNPALLSKPGVTILLFEILNYRLLPLYRYQGKTKALMYDVTKIIAALKGKRGDHRVFRLTENLCMNVIFSLRDFFSVKREGKGPTEFTETLNRMTVITLAILIKTRGVADADHLLYVQTMLEQILATSQHTWSEKTLRYFPSVLRDALAGRIDKKGLVIQAWQQAETTVINQCTQLLSPSGEPNYVTTYTSHSFPQHRQYLCAGAWILMHGHPENINTANLVRVLREFSPEEVTANIYTMVDVLLHQIQMELQHGHFMQDLLFKTSTNLAFLIWTHELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKQYILNRGPPEHWTYTGTFKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIVYRLIENDAMDQAEAVLAVYSPFLAYHPFRFTFVRDILAYFYGHLPGKLIVRILKVLDLSKIPLSESFPQHISSSNPVTCPPLDYFATLLMGLVNHVIPPLSSDAKSVSVGDTSNNSARAPHNKALPAQPGQMSASEGQKAFYQIQDPGTHTQLVLETAVIELLSLPVSASQIVSSLVQIVANIQPTLIQSSNCLHGAPNGVGQGSVLPTSPSGGSTDSLGASRSTPSVSGLSTSNFVWGSAYACQQPSCLLIQACGLLLAQLPTEFHSQLYLEATRVIKESWWLTDIKRSLGEVDSAAGYALLDPTWAAQDNTPTAIGNIVALLHSFFSNLPQEWLDGAQAIIKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNKILTLLLTTLVDVFGKNSQPSNHVEASEIKDLIDFLHHVVHYEGQGGPVQANSKPRPEVLALLGKASERLRPDVQHLFSHLKPDINTSIYAATHPKLAQNSGQ
Length1510
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.08
Grand average of hydropathy-0.055
Instability index42.09
Isoelectric point6.30
Molecular weight170438.30
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00351
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     673.93|     224|     289|     105|     389|       1
---------------------------------------------------------------------------
  105-  357 (329.65/279.90)	EFLLFALRSLCgIGYINwdtFLPSLLSSVSSAERDSV.VSSLRQLCCKIILIGLDFN.LKPVTHS.DIFSHMLNWLVNwDQGQnrmDESDvimswrPDKALIEWLHSCLDV.IWLLVEEDKCRVPfYELLRSGLQFIE...NIPDDEALFTLILEiHRRRDMMAMHMQMLDQhlhcPTFGTqrILT.LTTPNVS....GEAVGNLR....YSPITYPSVLGEPLNgeeLatSkVRGSLDWERALRCiRHAIRTAPSLDWWKRVLLVAP.C
  406-  646 (344.28/252.48)	DIFFFLMKSGC.IDFVD...FVGKLVVRLTEGDQQILrTNHVTWLLAEIIRIELVVNaLNSDSRKvETIRKILSFHRE.DRGS...DPNN......PQSILLDFISSCLTLrIWSLNTATREYLN.NEQLQKGKQIDEwwrQVGKDRMMDYMNMD.ERSIGMFWVVSYTMAQ....PAYDT..VMNwLSSAGVTellpGSNMPNERvmreVSPIPMTLISGFSMN...L..C.LKLAFQMEEALFS.NQVVPSIAMVETYTRLLLTAPqC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.68|      43|      99|     994|    1038|       2
---------------------------------------------------------------------------
  994- 1038 (64.78/43.98)	RVELQKALGNHLSWKDR..YPPfFDDIAARLLPVIPLIVYRLiENDA
 1090- 1134 (69.89/38.71)	KIPLSESFPQHISSSNPvtCPP.LDYFATLLMGLVNHVIPPL.SSDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.22|      13|      16|     872|     884|       3
---------------------------------------------------------------------------
  872-  884 (21.87/15.55)	PENINTA..NLVRVL
  889-  903 (17.35/10.73)	PEEVTANiyTMVDVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.36|      29|     469|     784|     818|       4
---------------------------------------------------------------------------
  784-  818 (44.43/36.80)	LATSQHTWSEKTLRYFPSVLrdalagRIDKKGLVI
 1261- 1289 (53.93/31.39)	LSTSNFVWGSAYACQQPSCL......LIQACGLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.89|      21|     469|     917|     954|       5
---------------------------------------------------------------------------
  664-  685 (33.10/ 7.39)	LLSKPGvTILLFEILNYRLLPL
  920-  940 (38.80/29.96)	LLFKTS.TNLAFLIWTHELLPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00351 with Med23 domain of Kingdom Viridiplantae
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