<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00350

Description Uncharacterized protein
SequenceMDQPPQRSSSASRAYQVHPSRAAINDLFNLYLGRNSRHRADDSVREPPNKAQKRVVAFNRDLPPQNDQFIVDFQQLQNQFADQDQLRSMTESVIISLVGLCRNHAPRAEFLLFALRSLCGIGYINWDTFLPSLLSSVSSTELLVGQGSQSMPVVSPTSLSQSERVASSGAIPNSNFQPSNPASPLSSVHVIGSPGQSTIEPSSGATMSPVKSSDISFSGQHAAVRTGSSVRDSGVSSLRQLCCKIILIGLDFNLKPVTHSDIFSHMLNWLVNWDQRQHGMDESNVIKSWRPDKALIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTQRILTLTTPNVSGEAVGNLRYSPITYPSVLGEPLNGEELATSIVRGSLDWERALRCIRHAIRTTPSPDWWKRVLLVAPCYRPSVQPPTPGAVFTSEMICEATIDRIIELLKLTNSEINCWSEWLIFSDIFFFLMKSGCIDFVDFVDKLFVRLTEADQHILRTNHVTWLFAEIIRVELVGNALNSDSRKVETIKKILSFHREDRGSDPNNPQSILLDFIGSCQTLRIWSLNTATREYLNNEQLQKGKQIEEWWRQVGKGDRMMDYMNMDERSIGMFWVVSYTMAQPVYDAVMNWLSSAGVTELLPGSNMPNERVMREVSPIPMTLISGFSMNLCLKLAFQMEETLFSNQVVPSIAMVETYTRLLLTAPHSSFRSHISQLAQRNPALLSKPGVTILLFEILNYRLLPLYRYQGKTKALMYDVTKIIAALKGKRGDHRVFRLTENLCMNVIFSLRDFFSVKREGKGPTEFTETLNRMTVITLAILIKTRGVADADHLLYVQTMLEQILATSQHTWSEKTLRYFPSVLRDALAGRIDKKGLVIQAWQQAETTVINQCTQLLSPSGEPNYVTTYTSHSFPQHRQYLCAGAWILMHGHPENINTTNLVRVLREFSPEEVTANIYTMVDVLLHQIQMELQHGHSMQDLLFKTSTNLAFLIWTHELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKQYILNRGPPEHWTYPGTFKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIVYRLIENDAMDQAEAVLAVYSPFLAYHPFRFTFVRDILAYFYGHLPGKLIVRILKVLDLSKIPLSESFPQHISSSNPVMCPPLDYFATLLMGLVNHVIPPLSSDAKSVSVGDTSNNSARAPHNKTLPAQPGQMSASEGQKAFYQIQDPGTHTQLVLETAVIELLSLPVSASQIVSSLVQIVVNIQPTLIQSSNCLHGAPNGVGQGSVLPTSPSGGSTDSLSGSRSTPSVSGLSTSNFVWRSAYTCQQLSCLLIQACGLLLAQLPTEFHSQLYLEATRVIKESWWLTDIKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLDGAQAIIKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNKILTLLLTTLVDVFGKNAQPSNHVEASEIKDLIDFLHHVVHYEGQGGPVQANSKPRPEVLALLGKTSERLRPDVQHLFSHLKPDINTSIYAATHPKLAQNSGQ
Length1602
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.08
Grand average of hydropathy-0.086
Instability index45.01
Isoelectric point6.66
Molecular weight179912.60
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00350
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.78|      24|     119|     442|     495|       1
---------------------------------------------------------------------------
  300-  341 (26.64/ 7.07)	HSCLDVIwllveedkcrvPFYellRSGLQfienIPDDEALFT
  442-  465 (46.14/59.27)	KRVLLVA...........PCY...RPSVQ....PPTPGAVFT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     285.28|      70|     124|     643|     715|       2
---------------------------------------------------------------------------
  124-  156 (37.84/19.61)	......INWDTFLP............SLLSSVSSTEL...LVGQ...GSQSMPVVSP.......................
  176-  216 (50.64/29.64)	...........FQPSN......PA..SPLSSVHVIG....SPGQSTIEPSSGATMSPVKSSDIS................
  643-  713 (122.27/94.43)	IGMFWVVSYTMAQPVY......DAVMNWLSSAGVTEL...LPGSNMPNERVMREVSPIPMTLISgFSMNLCLKLAFQMEE
  764-  824 (74.54/45.55)	ILLFEILNYRL.LPLYryqgktKALMY.....DVTKIiaaLKGKR.GDHRVFR............LTENLCMNVIFSLRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.19|      42|     342|     504|     550|       3
---------------------------------------------------------------------------
  504-  550 (64.14/52.55)	LMKS.GCIDfvdfVDKLFVRLTEADQhILRTNHVTW......LFAEIIRVELVG
  853-  901 (64.05/37.95)	LIKTrGVAD....ADHLLYVQTMLEQ.ILATSQHTWsektlrYFPSVLRDALAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.05|      32|     281|    1136|    1167|       4
---------------------------------------------------------------------------
 1136- 1167 (60.08/37.09)	AV.LAVYSPFLAYHPFRFTFVRDILAY...FYGHLP
 1419- 1454 (46.97/27.40)	AVgYALLDPTWAAQDNTSTAIGNIVALlhsFFSNLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.56|      47|     281|    1199|    1313|       5
---------------------------------------------------------------------------
   41-  100 (65.70/14.01)	DDSVREPPNKAqkrvvafnrdLPPQNDQF.IVD....FQQLQNQfADQDQLrsMTESVIISLVGL
 1236- 1287 (72.86/132.58)	NNSARAPHNKT..........LPAQPGQMsASEgqkaFYQIQDP.GTHTQL..VLETAVIELLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.91|      42|     781|     583|     630|       6
---------------------------------------------------------------------------
  583-  630 (65.86/52.20)	SILLdfIGSCQTLriwsLNTATREYLNNEQLQKGKQIEE.WW.....RQVGKGD
 1370- 1417 (66.05/36.67)	SCLL..IQACGLL....LAQLPTEFHSQLYLEATRVIKEsWWltdikRSLGELD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00350 with Med23 domain of Kingdom Viridiplantae
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