<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00348

Description Uncharacterized protein
SequenceMELLTPCQHPHDLSRDRLTLLSSPDSLRRALEQLSNTSRSSSLEMAAAPERVYVAVGKSAEKARDLILWSLRRFAGAEICIFHVHQPSPLIPTLLGKLPASRASVEVVAAYRREEREQTDKLLQQYLAICSTTSEVRATVLSTEAGQVQKGIVEMVIKYGIRRLVMGAVPENCIKVKKSSSKANYAAKNAPGFCEISFVNKGRRIWTRDANGGPVPLDSLSQPQTSARVISCEPLQESSRLSVLIIPESRWSTSSSSGSCSKVIDWLHDESVSPREALTSSPSRSRHSGSLFSSKSTSGCSGRIHSEIRVSLDSDARGNEEFLYSQFHELRIQAETMKEAALQESMKREKLEAHTLKVISKVKVRESAYKHEARLRNQAEEALKTAAQKQEKLLEEREEIVRKLQKTMRNVTLLESRAQEASRRHDVAAGDLREIEASIATLRQEKQQIQRHKGEAVGWLERWKGHGRAGASRCVGFVGRLNEDMPGVAEFSLSEVQSATCDFSESFKIGQSGYGCVYKGEMLGRTVAIKKLHPHNMQGQFEFQREVQALSKLQHPHLVTLLGSCPESWSLVYEYLPNGSLQDYLFRKGNSSSLLWDARVRIIAEISTALCFLHSSKPERIVHGDLKPENVLLDSDLSCKICDFGISRLVVEDTLRCPSFRRITEPKRAFPYTDPEFYRDGNLTPKSDVYSFGLIILQLLTGEPPTGLVREVHKAKSSNKLESVLDQSAGQWPSSVALRLVDLGLQCCDSNGRNRPKLTPAFVRELEQLHTSEERPVPPFYLCPILQEIMHDPQIAADGFTYEGEAMREWLDNDHDTSPMTNLKLSHLHLTPNHALRSAIQEWLCYP
Length847
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.430
Instability index54.11
Isoelectric point8.36
Molecular weight94971.99
Publications
PubMed=24919147

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00348
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.72|      45|      46|     330|     374|       1
---------------------------------------------------------------------------
  321-  346 (32.78/17.69)	...................EFLYSQFHELRIQA.ETMKEAAL.QESM
  347-  393 (62.31/39.89)	KREKLEAHTLKVISKVKVRESAYKHEARLRNQAeEALKTAAQkQEKL
  396-  423 (30.63/16.07)	EREEIVRKLQKTMRNVTLLESRAQEASR...................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.60|      45|      45|     213|     257|       2
---------------------------------------------------------------------------
   21-   80 (38.86/20.80)	...LSSPDSLRR.AL..EQLSNTSRsssLEMAAAPERVyvavgksaekardlilWSlRRFAGAEIC
  217-  261 (75.63/48.63)	LDSLSQPQTSAR.VISCEPLQESSR...LSVLIIPESR................WS.TSSSSGSCS
  264-  301 (52.11/30.83)	IDWLHDESVSPReALTSSP.SRS.R...HSGSLF..SS................KS.TSGCS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     477.11|     116|     283|     458|     573|       3
---------------------------------------------------------------------------
  458-  573 (201.52/101.20)	GWLERWKGH....................GRAGASRCVGFVGR....LNE....DMPGVAEFSLSEVQSATCDFSESFKIGQSGYGCVYKGEMLGRTVAIKKLHPHNMQGQFEFQRE..VQALSKLQ..HPHLV..T..LLGSCPESWSLVY
  595-  709 (150.02/73.67)	LWDARVRII....................AEISTALCFLHSSKperiVHG....DLKPENVLLDSDLSCKICDFGISRLVVEDTLRC....PSFRRITEPKRAFPYT...DPEFYRDgnLTPKSDVY..SFGLIilQ..LLTGEPPT.GLV.
  725-  846 (125.57/60.61)	..LDQSAGQwpssvalrlvdlglqccdsnGRNRPKLTPAFVRE....LEQlhtsEERPVPPFYLCPILQ...EIMHDPQIAADGF..TYEGE..............AMREWLDNDHD..TSPMTNLKlsHLHLT..PnhALRSAIQEW.LCY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.65|      25|      44|     145|     170|       5
---------------------------------------------------------------------------
  145-  170 (39.68/33.85)	AGQVQKGIVEM.VIKYGiRRLVM.....GAVP
  186-  216 (37.97/26.86)	AAKNAPGFCEIsFVNKG.RRIWTrdangGPVP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00348 with Med32 domain of Kingdom Viridiplantae
Unable to open file!