<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00348

Description Uncharacterized protein
SequenceMELLTPCQHPHDLSRDRLTLLSSPDSLRRALEQLSNTSRSSSLEMAAAPERVYVAVGKSAEKARDLILWSLRRFAGAEICIFHVHQPSPLIPTLLGKLPASRASVEVVAAYRREEREQTDKLLQQYLAICSTTSEVRATVLSTEAGQVQKGIVEMVIKYGIRRLVMGAVPENCIKVKKSSSKANYAAKNAPGFCEISFVNKGRRIWTRDANGGPVPLDSLSQPQTSARVISCEPLQESSRLSVLIIPESRWSTSSSSGSCSKVIDWLHDESVSPREALTSSPSRSRHSGSLFSSKSTSGCSGRIHSEIRVSLDSDARGNEEFLYSQFHELRIQAETMKEAALQESMKREKLEAHTLKVISKVKVRESAYKHEARLRNQAEEALKTAAQKQEKLLEEREEIVRKLQKTMRNVTLLESRAQEASRRHDVAAGDLREIEASIATLRQEKQQIQRHKGEAVGWLERWKGHGRAGASRCVGFVGRLNEDMPGVAEFSLSEVQSATCDFSESFKIGQSGYGCVYKGEMLGRTVAIKKLHPHNMQGQFEFQREVQALSKLQHPHLVTLLGSCPESWSLVYEYLPNGSLQDYLFRKGNSSSLLWDARVRIIAEISTALCFLHSSKPERIVHGDLKPENVLLDSDLSCKICDFGISRLVVEDTLRCPSFRRITEPKRAFPYTDPEFYRDGNLTPKSDVYSFGLIILQLLTGEPPTGLVREVHKAKSSNKLESVLDQSAGQWPSSVALRLVDLGLQCCDSNGRNRPKLTPAFVRELEQLHTSEERPVPPFYLCPILQEIMHDPQIAADGFTYEGEAMREWLDNDHDTSPMTNLKLSHLHLTPNHALRSAIQEWLCYP
Length847
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.430
Instability index54.11
Isoelectric point8.36
Molecular weight94971.99
Publications
PubMed=24919147

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00348
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.72|      45|      46|     330|     374|       1
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  321-  346 (32.78/17.69)	...................EFLYSQFHELRIQA.ETMKEAAL.QESM
  347-  393 (62.31/39.89)	KREKLEAHTLKVISKVKVRESAYKHEARLRNQAeEALKTAAQkQEKL
  396-  423 (30.63/16.07)	EREEIVRKLQKTMRNVTLLESRAQEASR...................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     166.60|      45|      45|     213|     257|       2
---------------------------------------------------------------------------
   21-   80 (38.86/20.80)	...LSSPDSLRR.AL..EQLSNTSRsssLEMAAAPERVyvavgksaekardlilWSlRRFAGAEIC
  217-  261 (75.63/48.63)	LDSLSQPQTSAR.VISCEPLQESSR...LSVLIIPESR................WS.TSSSSGSCS
  264-  301 (52.11/30.83)	IDWLHDESVSPReALTSSP.SRS.R...HSGSLF..SS................KS.TSGCS....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     477.11|     116|     283|     458|     573|       3
---------------------------------------------------------------------------
  458-  573 (201.52/101.20)	GWLERWKGH....................GRAGASRCVGFVGR....LNE....DMPGVAEFSLSEVQSATCDFSESFKIGQSGYGCVYKGEMLGRTVAIKKLHPHNMQGQFEFQRE..VQALSKLQ..HPHLV..T..LLGSCPESWSLVY
  595-  709 (150.02/73.67)	LWDARVRII....................AEISTALCFLHSSKperiVHG....DLKPENVLLDSDLSCKICDFGISRLVVEDTLRC....PSFRRITEPKRAFPYT...DPEFYRDgnLTPKSDVY..SFGLIilQ..LLTGEPPT.GLV.
  725-  846 (125.57/60.61)	..LDQSAGQwpssvalrlvdlglqccdsnGRNRPKLTPAFVRE....LEQlhtsEERPVPPFYLCPILQ...EIMHDPQIAADGF..TYEGE..............AMREWLDNDHD..TSPMTNLKlsHLHLT..PnhALRSAIQEW.LCY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.65|      25|      44|     145|     170|       5
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  145-  170 (39.68/33.85)	AGQVQKGIVEM.VIKYGiRRLVM.....GAVP
  186-  216 (37.97/26.86)	AAKNAPGFCEIsFVNKG.RRIWTrdangGPVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00348 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA