<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00347

Description Uncharacterized protein (Fragment)
SequenceTSASQYGSIPMNLHNVKAGTPSPKWEGGALLSQVNNNSRFSHVTPQYSGSLYSAGNVRGSVPSSSLSSLSSATGRSANMMRLSASKSDQDLTSLRSPGSVEVASYTTIEDDQIRLLKDPAKDAISARSSQLLSPPRPTGTLVPGPSGKFTGPKSGTYSSVGGSMKVSAPNSWVTTPVSPAVDSAVHTTCQEVIPKHEKTSRKRTVSDMLNLIPSLQSLESGVKSCKRRRVLDVATSQEPSSEAVNLTETISRSCGYSYGKLIAEANTGNVPSSIYVSALLHVVRHCSLSIKHARLTSQMEALDIPYVEEVGLRNASSKIWFRLPFARGDSWQQICLRLGGPGSMYWDVKINDQHFRDLWELQKGSSTTPWGSGVRIANTSDVDSHIRYDPEGVVLSYQSVEADSIEKLVADIQRLSNARMFALGMRKLLGVKSDDRQEEVPVNSDVKAPTGAKYGAETVDKFAEQMRRIFRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLHSLAAATRPARATPVSGMPGVTAALSSMSKQTGFVPSHGLLSSSSATHVGQGASIHAGNPALPSATGPPGSHNLQGAAMSATAVRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKHFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLEPNLGGSQQTIGLGNSTTANSGSNAQLSAANGTRANLSSASISRAGIQVAPGNRLGNAQAGSSTLGASGPGLPLRRSPNTVVPAHVKGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILNNNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHQQQQQQQQQQNSSTTQEELTQSEIGEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLSQTQGGDIAPAQKPRIELCLENHTGFNMGENAGQSSVCKSNIHYDRPRNSVDFGLTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYSFGENSHVSFLGMEGSHGGRACWLQKDDWDKCRQRVSRTAETSSAGDATQGRLRAVADNVQRALHICLQGLRDSSGTGSSGVL
Length1142
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.210
Instability index48.33
Isoelectric point9.09
Molecular weight122203.83
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00347
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.61|      33|      34|     565|     597|       1
---------------------------------------------------------------------------
   51-   73 (26.62/ 8.17)	..LYSAGNVRGSVPSSSLSSLS.SAT........
  565-  597 (58.98/26.41)	AALSSMSKQTGFVPSHGLLSSS.SATHVGQGASI
  602-  632 (51.00/21.91)	PALPS...ATGPPGSHNLQGAAmSATAVRGGPGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     397.06|     113|     356|     654|     779|       2
---------------------------------------------------------------------------
  656-  779 (185.65/125.63)	Y.RKHFAVDMrcfaGDQVWLQPATPPKGGpSVGGS..LP.C..PQFRPFIMEHVAQELNGLEPNLGG....SQ...Q...TIGLGNSTTANSGSNAQLSAANGTRANLSSA..SISRAGIQVAPGNRlgnaqaGSSTLGASG
  955- 1015 (46.92/16.79)	.....................................LP.I..SVLREF.LKLIAWK.KGLSQTQGGdiapAQ...KpriELCLENHTGFNMGENAGQSSV..CKSNI..................................
 1017- 1140 (164.48/86.08)	YdRPRNSVDF....GLTVVLDPAHIPHIN.AAGGAawLPyCvsVRLRYSFGENSHVSFLGMEGSHGG....RAcwlQ...KDDWDKCRQRVSRTAETSSAGDATQGRLRAVadNVQRALHICLQGLR......DSSGTGSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.46|      14|      39|     124|     137|       3
---------------------------------------------------------------------------
  124-  137 (23.04/10.65)	ISARSSQLLSPPRP
  142-  155 (25.00/12.24)	VPGPSGKFTGPKSG
  166-  179 (26.42/13.40)	VSAPNSWVTTPVSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.94|      60|     356|     454|     519|       4
---------------------------------------------------------------------------
  454-  519 (94.80/78.72)	YGAETVDKFAeqMRRIFR..IEAVGLmsLW.FSFGSGVLARFVVEWESGKEGCTMHVspDQLWPHTKFL
  813-  875 (94.14/59.64)	YGGGWVPLVA..LKKVLRgiLKYLGV..LWlFAQLPDLLKEILGSILNNNEGALLNL..DQEQPALRFF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.25|      30|      31|     224|     254|       5
---------------------------------------------------------------------------
  224-  254 (45.27/41.75)	SCKRrRVLDVATSQEPSSEAVNLTETISRSC
  257-  286 (50.98/41.19)	SYGK.LIAEANTGNVPSSIYVSALLHVVRHC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.32|      35|     344|      12|      49|       6
---------------------------------------------------------------------------
   12-   49 (60.24/41.59)	NLHNVKAGTPSPKWEGGAllsQVNNNSRF.SHVTPQYSG
  357-  392 (59.08/33.79)	DLWELQKGSSTTPWGSGV...RIANTSDVdSHIRYDPEG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00347 with Med14 domain of Kingdom Viridiplantae
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