<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00333

Description Uncharacterized protein
SequenceMSTTGGGDRGPPPAMTAVAVAVAVKGDLSGFEGGRGSRRAVRWAVENLMPGADRLVLVHVMPRVTSIPTPSGDRIPVAELDDSVVAMYVEETKVKYEQVFVPFKKLCKPWKVETLVLEDDNPAAALLRFVSNVGINNLVLGSCSSNAFARKLKGAAVPATVLTCAPETCDVYVISRNNIVSKSDKGSGHGMLAQTNHEDVFDGSSYPTSCANSLCGESDFNDSIRGSPPSEPSFVTALASDHTDYPNSANVDQESRYSYIGDAPEMDFLEQSASMASRPTEQSDVQAEIEKLRQELENTIFMYERACEELVHAQNKVQELSSECGEEARRVNSALQREEILRKFAAEERAKYMEALKEVEDAKSLLVKEGYERQIAELNALKESLEKQKFIDMLLLSDKRYRKYTRDELEIATNSFSETNVIGEGAYGKVYKCNLDHTPVAVKVLRSDACERKEEFLREVEVLSQLRHPHLVLLLGACPESRGLVYEYMENGSLEEYIYQQNGKPSLPWFVRFRITFEVACGLAFLHNSKPAPIVHRDLKPGNILLGRNYVSKIGDVGLSKLISDVVPDNVTEYRDSVLAGTIYYMDPEYQRTGTLRPKSDLYAFGIIILQLLMGRHPNGLLLKAEEAIERGSFASILDNTVKDWPVAETEELAQMALKCSKLRCRDRPDLENEVLPVLKKLADFASANARVGRENACAPSHYFCPILQEVMQDPCVAADGFTYEHRAIKAWLEKHSVSPVTRKKLQHMVLIPNHTLRSAIHDWRSRVTIKENHD
Length775
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.337
Instability index46.72
Isoelectric point5.62
Molecular weight86445.32
Publications
PubMed=24919147

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00333
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.08|      41|      48|     196|     237|       1
---------------------------------------------------------------------------
  196-  237 (72.27/52.20)	NHEDVFDGSSYPTSCANSLCG...ESDF...NDSIrGSPPSEPSFVTA
  241-  287 (63.80/41.01)	DHTDYPNSANVDQESRYSYIGdapEMDFleqSASM.ASRPTEQSDVQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.30|      50|      64|       4|      53|       3
---------------------------------------------------------------------------
    4-   53 (87.65/67.27)	TGGGDRGPPPAMTAVAVAVAVKGDLSGFEGGRGSRRAV..RWAVENLMPGAD
   69-  120 (80.65/61.22)	TPSGDRIPVAELDDSVVAMYVEETKVKYEQVFVPFKKLckPWKVETLVLEDD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00333 with Med32 domain of Kingdom Viridiplantae
Unable to open file!