<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00331

Description Uncharacterized protein
SequenceMVMPSLSPDMALGDIAKGSSVPMSTTERSLIVAVDGTAAMGPYWKTIVSDYLEKIVRAFVGNEVPAQRSNCDLSLVMFNSHGSLSACMVQRSAWTKDVSCFLEWLSAMSFSGGGFNDAAIAEGLSEALMMFPLPLNGNLPPQSLDGKRHCVLVAATNPYPLSTPVYRPTFQLEDEHVETYSGKPLCDAEGVAKFFPQCCVSLSVICPKQLPKLRAIYNAGKRNPRAADPPVDNGKNTHFLVLIAENFLEARTALSRPGTASLPSNQSPVKMDTTPPPVNSVTAQPPASVPPVSLLSRQAVSAGNGPPAIVKVEPTTVTSMAAGPNFSHIPSVQRPTTQGVSALQTSSPSSVSQDMVTNNESVQDLKPVVSAGIPQTLRPVVPANSNILNNLSQVRQVVNSATLTGGTSIGLQSMGQNPMAMHMSNMISSGMQSTVPAAQTGYSSGQSGITSVTGPGTLSGTIPSAQNPGLGSFASATSNITGNSNIGMSQPTGNLQVGPGMGQTAPGMSQGSLSGSQMVQNGVGMNPNMMSSLGPTAPSSGSGTMMPTPGMPSQGQSGMSSINGNSNPGPGASMPLSQQSSSALQSAQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLVMCSHSITVSDAAALCVRQGMPLDWNAFPWGYGCIQAANSEPATTTTDAATTATDAAAIAGPTASADAAATASPDAAAAADASTAAAPAPTDADDAPTTAADAAAPVADATTAAAAAATTATSPTAAAATPTTAATSAAATTCTAAVDGVRNGTRLCPRSRAFTVDATGTRFITRAAQHAWRGIHELI
Length863
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.04
Grand average of hydropathy-0.097
Instability index46.32
Isoelectric point6.42
Molecular weight88584.92
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00331
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     273.70|      56|      66|     697|     752|       1
---------------------------------------------------------------------------
  253-  288 (35.59/ 8.88)	...................ALSRPGTASLPSNQSPVK.MDTTPPPVNSVTAQPPAS....
  291-  346 (63.82/21.60)	PvslLSRQAVSAGNGPPAIVKVEPTTVTSMAAGPNFShIPSVQRPTTQGVSALQTS....
  697-  751 (93.44/34.95)	P...LDWNAFPWGYGCIQAANSEPATTTTDAATTATD.AAAIAGPTASADAAATASPDA.
  752-  786 (45.38/13.30)	..................AAAADASTAAAPAPTDADD.A.....PTTAADAAAPVA.DAT
  787-  821 (35.47/ 8.83)	.........................TAAAAAATTATSpTAAAATPTTAATSAAATTCTAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     288.68|      67|      68|     454|     520|       2
---------------------------------------------------------------------------
  348-  387 (36.12/ 8.04)	.................................PsSVSQDMVTNNESVQ...DlkP.VVSAGIPQTLRP....VVPANSNI
  404-  480 (92.59/30.97)	TGGTSIGlqsMGQnPmamhMSNM.ISSGMQSTVP.AAQTGYSSGQSGITsvtG..PGTLSGTIPSAQNPGLGSFASATSNI
  481-  551 (111.88/38.80)	TGNSNIG...MSQ.P....TGNLQVGPGMGQTAP.GMSQGSLSGSQMVQngvGmnPNMMSSLGPTAPSSGSGTMM.PTPGM
  552-  588 (48.08/12.89)	PSQGQSG...MSS.I....NGNSN..PGPGASMP..LSQQSSSALQSAQ................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.21|      11|      15|     822|     834|       3
---------------------------------------------------------------------------
  822-  834 (17.88/18.14)	VDGvrNGTRLCPR
  840-  850 (20.33/12.45)	VDA..TGTRFITR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00331 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRPGTASLPSNQSPVKMDTTPPPVNSVTAQPPASVPPVSLLSRQ
2) SMAAGPNFSHIPSVQRPTTQGVSALQTSSPSSVSQDMVTNNESVQDLKPVVSAGIPQT
3) TLTGGTSIGLQSMGQNPMAMHMSNMISSGMQSTVPAAQTGYSSGQSGITSVTGPGTLSGTIPSAQNPGLGSFASATSNITGNSNIGMSQPTGNLQVGPGMGQTAPGMSQGSLSGSQMVQNGVGMNPNMMSSLGPTAPSSGSGTMMPTPGMPSQGQSGMSSINGNSNPGPGASMPLSQQSSSA
254
319
402
298
376
583










Molecular Recognition Features






MoRF SequenceStartStop




1) AAAAA
788
792