<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00330

Description Uncharacterized protein
SequenceMVMPSLSPDMALGDIAKGSSVPMSTTERSLIVAVDGTAAMGPYWKTIVSDYLEKIVRAFVGNEVPAQRSNCDLSLVMFNSHGSLSACMVQRSAWTKDVSCFLEWLSAMSFSGGGFNDAAIAEGLSEALMMFPLPLNGNLPPQSLDGKRHCVLVAATNPYPLSTPVYRPTFQLEDEHVETYSGKPLCDAEGVAKFFPQCCVSLSVICPKQLPKLRAIYNAGKRNPRAADPPVDNGKNTHFLVLIAENFLEARTALSRPGTASLPSNQSPVKMDTTPPPVNSVTAQPPASVPPVSLLSRQAVSAGNGPPAIVKVEPTTVTSMAAGPNFSHIPSVQRPTTQGVSALQTSSPSSVSQDMVTNNESVQDLKPVVSAGIPQTLRPVVPANSNILNNLSQVRQVVNSATLTGGTSIGLQSMGQNPMAMHMSNMISSGMQSTVPAAQTGYSSGQSGITSVTGPGTLSGTIPSAQNPGLGSFASATSNITGNSNIGMSQPTGNLQVGPGMGQTAPGMSQGSLSGSQMVQNGVGMNPNMMSSLGPTAPSSGSGTMMPTPGMPSQGQSGMSSINGNSNPGPGASMPLSQQSSSALQSAQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQMQQQQQQMQQQLQAPPHPQMQQQQLPQMQQQQQMPQQLQPQHQQMQMMPQQQQQMQQLQSQMPQLQQQQQPPQQHLQQLQPQHPQQQQLQQLQQHAPQQLMGSGMGQGYVQGPGRSQLMPQGPVSSQGLPNMPGGGFMS
Length860
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.04
Grand average of hydropathy-0.351
Instability index65.28
Isoelectric point8.82
Molecular weight91525.14
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00330
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     242.86|      31|      31|     748|     778|       1
---------------------------------------------------------------------------
  500-  547 (32.25/ 6.65)	.GM.GQTA.P...GMSQgslsGSQMVQNgvgmnpnmmsslgpTA.P.SSGSGTMMP
  715-  741 (41.16/11.03)	SQQ.QQ.Q.Q...MQQQ....QQQMQQQ..............LQaP.PHPQM....
  742-  770 (48.69/14.73)	.....QQQ.Q.lpQMQQ....QQQMPQQ..............LQ.P.QHQQMQMMP
  771-  793 (31.92/ 6.49)	QQQ.QQMQ.QlqsQM..............................P.QLQQQQQPP
  794-  823 (46.33/13.57)	QQHlQQLQ.P...QHPQ....QQQL.QQ..............LQ...QHAPQQLMG
  824-  854 (42.52/11.70)	SGM.GQGYvQ...GPGR....SQLMPQ................G.PvSSQGLPNMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     370.41|      64|      66|     300|     363|       2
---------------------------------------------------------------------------
  137-  192 (76.97/27.23)	...GNLPPQSLDGK.RHCVLVAATN......................PYPLSTP.V.YRP.....T.FQ.....LEDEH...VETYSGKPLCD..AEGVA
  217-  293 (59.06/19.19)	YNAGKRNPR..AAD.P....PVDNGknthflvliaenfleartalsrPGTASLPSN.QSPvkmdtT.PPPVN.SVTAQP...PASVP..........PVS
  300-  363 (107.36/40.89)	VSAGNGPPAIVKVE.PTTVTSMAAG......................PNFSHIPSV.QRP.....T.TQGVS.ALQTSS...PSSVSQDMVTN..NESVQ
  369-  432 (65.24/21.96)	VSAG.IPQTLRPVV.PANSNIL.........................NNLSQVRQVvNSA.....TlTGGTSiGLQSMG...QNPMAMHM.SNmiSSGMQ
  442-  497 (61.79/20.41)	YSSGQS..GITSVTgPGTLSGT..............................IPSA.QNP.....G.L.GSF.ASATSNitgNSNIGMSQPTG..NLQV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00330 with Med25 domain of Kingdom Viridiplantae
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