<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00329

Description Uncharacterized protein
SequenceMELLPASLTFAVAWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVRADSPRDSVQFIEWSPSSCPRALLIANFHGSVTIWTQPFQGPANLVKDASCWQCEHQWRQDIAVVTKWLSGVSPYRWLSSKSSTLANSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLNWSQWPPSQSGVAPKWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKVSATPGVPPSVNPPNWAGFAPLAAYLFSWQEYLLSEAKQGKRQTDQDLNDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVIHHIFGNPSSSFGGQAPMQTVWVSKVDTSIPPTSDFRSHQSLAAGPTSDVAKTSDSDVEKAKRVSFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAAVDNYQINVGSAIAAPAFSSTSCCSASVWHDSKKDQTILKIIRVLPPALPSSQLKANASTWERAIAERFWWSLMVGVDWWDAVGCTQSAAECGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVLEPWQASSEMFSGIDPEGLAVDPALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVNAGTGSNRNMVTSPNQTSASPTTSQAGQSGTASSSGSTQINAWVQGAIAKISNTNEGASGAAPPMNGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRSQLPRFASTAQRISDSNGQKPQPGGPGKVEEMNSISTKPASSITRSDEGQGARAGQTATGSKAAEEGSAGRSRLGSGNAGQGYTFEEVKVLFLILRDLCLRTATLPHPLPVSQVGIGNIQVRLHYIEGNYTVLPEVVEASLGPYMQSMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDAGPVEDNPKSSNGSLNSNSLEAFDAYPGVLSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVITAMWKTGLDGTWYKCMRCLRQTSAFASPGSASPPNQNERETYWISRWVHGCPICGGAWVRVV
Length1164
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.08
Grand average of hydropathy-0.139
Instability index46.65
Isoelectric point6.65
Molecular weight125048.74
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.38|      31|      74|     317|     351|       1
---------------------------------------------------------------------------
  318-  351 (49.80/37.60)	VSNFSayvSPEAAAQSAATTTWGSGVTAVAFDPT
  493-  523 (55.59/29.00)	VHIFS...GPNFAAVDNYQINVGSAIAAPAFSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     629.94|     153|     588|      80|     236|       2
---------------------------------------------------------------------------
   80-  236 (268.61/115.80)	PRALLIANFHGSvtiwTQPFQG..PANLVKDAS...CWQCEHQWRQDIA..VVTKWLSGVSPYRWLSSKSSTLANSKSTFEEKFLSQQSQTSARWPNFLCV.....CS..VFSSGSV....QLNWSQWPPSQ..SGVAPKWFHTSKGLLGA.....GPSGIMAADAIITDSGA...MHVAGVPIV
  528-  663 (159.77/61.93)	...............................AS...VWH.DSKKDQTIL..KIIRVLPPALPSSQLKANASTW...ERAIAERFWWSLMVGVDWWDAVGCTqsaaeCG..IVSLNSViavlDADFHSLPSTQhrQQYGPS.LDRIKCRLLE.....G.TNAQEVRAMVLDMQArllLDMLGKGIE
  669-  822 (201.55/80.68)	PSALVLEPWQAS....SEMFSGidPEGLAVDPAlvpSIQAYVDAVLDLAshFITRLRRYASFCRTLASHA...VNAGTGSNRNMVTSPNQTSASPTTSQAG.....QSgtASSSGST....QIN..AW..VQ..GAIA.KISNTNEGASGAappmnGPSSFM...PISINTGT...F..PGTPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.72|      66|     596|     387|     463|       3
---------------------------------------------------------------------------
  387-  463 (97.79/68.25)	ESSLQPvvihHIFGNPSSSfGGQA...........PMQTVWvSKVDTSIPPTSDFRShqslaAGPTSDVAKTSDSDVEKAKRVSFDPF
  984- 1060 (116.93/56.69)	EASLGP....YMQSMPRPR.GADAaglllrelelhPPAEEW.HRRNMYGGPWSDPDD.....AGPVEDNPKSSNGSLNSNSLEAFDAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.88|      30|     232|      12|      41|       4
---------------------------------------------------------------------------
   12-   41 (59.10/29.82)	VAWC...GKLNAIACASETCAR..IPSSTANPP.......FW
  242-  275 (46.99/22.14)	VVWEvtpGPGNGFQATPKVSATpgVPPS.VNPP.......NW
 1120- 1145 (21.79/ 6.15)	..............CLRQTSAF..ASPGSASPPnqneretYW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.30|      21|      23|     884|     905|       5
---------------------------------------------------------------------------
  884-  905 (34.35/23.38)	KPA..SSITRSDEGQGaRAGQTAT
  908-  930 (32.96/17.88)	KAAeeGSAGRSRLGSG.NAGQGYT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00329 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVTSPNQTSASPTTSQAGQSGTASSS
2) RRNMYGGPWSDPDDAGPVEDNPKSSNGSLNS
3) STAQRISDSNGQKPQPGGPGKVEEMNSISTKPASSITRSDEGQGARAGQTATGSKAAEEGSAGRSRLGS
738
1021
854
770
1051
922










Molecular Recognition Features






MoRF SequenceStartStop




NANANA