<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00328

Description Uncharacterized protein
SequenceMELLPASLTFAVAWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVRADSPRDSVQFIEWSPSSCPRALLIANFHGSVTIWTQPFQGPANLVKDASCWQCEHQWRQDIAVVTKWLSGVSPYRWLSSKSSTLANSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLNWSQWPPSQSGVAPKWFHTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKVSATPGVPPSVNPPNWAGFAPLAAYLFSWQEYLLSEAKQGKRQTDQDLNDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAIVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVIHHIFGNPSSSFGGQAPMQTVWVSKVDTSIPPTSDFRSHQSLAAGPTSDVAKTSDSDVEKAKRVSFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAAVDNYQINVGSAIAAPAFSSTSCCSASVWHDSKKDQTILKIIRVLPPALPSSQLKANASTWERAIAERFWWSLMVGVDWWDAVGCTQSAAECGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVLEPWQASSEMFSGIDPEGLAVDPALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVNAGTGSNRNMVTSPNQTSASPTTSQAGQSGTASSSGSTQINAWVQGAIAKISNTNEGASGAAPPMNGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRSQLPRFASTAQRISDSNGQKPQPGGPGKVEEMNSISTKPGARAGQTATGSKAAEEGSAGRSRLGSGNAGQGYTFEEVKVLFLILRDLCLRTATLPHPLPVSQVGIGNIQVRLHYIEGNYTVLPEVVEASLGPYMQSMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDAGPVEDNPKSSNGSLNSNSLEAFDAYPGVLSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVITAMWKTGLDGTWYKCMRCLRQTSAFASPGSASPPNQNERETYWISRWVHGCPICGGAWVRVV
Length1153
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.08
Grand average of hydropathy-0.130
Instability index46.29
Isoelectric point6.77
Molecular weight123916.60
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00328
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     264.34|      75|     329|     613|     690|       2
---------------------------------------------------------------------------
  220-  268 (31.08/15.04)	..........................................AIITDSGA...MHVAGVPI....VNPSTVVV..WevtpgpgngfQATPKVSAtpG..VPP.
  613-  690 (125.99/95.79)	LPSTQHRQQYGPSLDRIKCRLLEG..TNAQEV.........RAMVLDMQArllLDMLGKGIESALVNPSALVLEPW..........QASSEMFS..G..IDPE
  940- 1022 (107.27/73.62)	LPHPLPVSQVGIGNIQVRLHYIEGnyTVLPEVveaslgpymQSMPRPRGA....DAAGLLLRELELHPPA...EEW..........H.RRNMYG..GpwSDPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.47|      11|      18|     136|     146|       3
---------------------------------------------------------------------------
  136-  146 (19.50/10.57)	RWLSSKSSTLA
  155-  165 (18.97/10.09)	KFLSQQSQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.78|      27|     589|     178|     216|       4
---------------------------------------------------------------------------
  178-  216 (44.98/25.05)	SSGSVQLN.WSQwppsqsgvapkwFHTSKGLLGA.....GPSGIM
  769-  807 (36.81/16.94)	SSGSTQINaWVQ......gaiakiSNTNEGASGAappmnGPSSFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     228.01|      48|     792|     313|     360|       5
---------------------------------------------------------------------------
  313-  360 (87.50/50.10)	LHC..SPVSNFSAYVSPEAAA...QSAATTTWGSGVTAVAFDPT..CGGSVIAIV
  396-  427 (41.64/19.42)	HHIfgNPSSSFGG...........QAPMQTVWVSKVD.TSIPPT...........
  494-  530 (43.24/20.49)	.HI.......FS...GPNFAA...VDNYQINVGSAIAAPAFSSTscCSASV....
 1114- 1153 (55.63/28.77)	...........SAFASPGSASppnQNERETYWISR..WVHGCPI..CGGAWVRVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.38|      26|     585|     438|     463|       6
---------------------------------------------------------------------------
  438-  463 (44.27/30.61)	AGPTSDVAKTSDSDVEKAKRVSFDPF
 1024- 1049 (45.10/31.33)	AGPVEDNPKSSNGSLNSNSLEAFDAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.74|      57|     113|     700|     765|       9
---------------------------------------------------------------------------
  700-  765 (80.00/81.95)	PSIQAyVDAVLDlaSHFITRLRRYASFCRTLASHAVNAGTGSNRNMVTSPNQtsaSPttsQAGQSG
  817-  873 (106.74/75.35)	PGTPA.VRLIGD..CHFLHRLCQLLLFCYFFRRSQLPRFASTAQRISDSNGQ...KP...QPGGPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00328 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGSNRNMVTSPNQTSASPTTSQAGQSGTASSS
2) RRNMYGGPWSDPDDAGPVEDNPKSSNGSLNS
3) STAQRISDSNGQKPQPGGPGKVEEMNSISTKPGARAGQTATGSKAAEEGSAGRSRLGS
738
1010
854
770
1040
911










Molecular Recognition Features






MoRF SequenceStartStop




NANANA