<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00325

Description Uncharacterized protein
SequenceMREAYLPELNEMYQKISIKLQQHESLPLQPKSDQLDNLKNFKLILERIIAFLQVNKADIVPSFKEKLVHYEKQIINFINTSRPRKVAIQQGQLAPPRVHSMQQQQQQQQQQQQQLQPQTTQVQSHENQMNPQLESMNLQGSVASMQQNNMGNLNHYSMSLSGVSNAQQTMIDSLQPNSNMDSGTGNASSTMQVIGMGSMQQNPVAPQQVNMSTMQQQGGVYMLQSNVNKHQSNSNMLQCQPLKQQQEQQMLQTQQLKQQYQQPQMQQQLKQQLLQQQLQQAKQQLPWQLQTHQRRSNIQLRNAAWALLLLVVVIYYIKIFLLS
Length323
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.05
Grand average of hydropathy-0.750
Instability index69.48
Isoelectric point9.63
Molecular weight37340.23
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00325
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.35|      21|      21|     127|     147|       2
---------------------------------------------------------------------------
  127-  147 (37.40/11.45)	NQMNPQLESMNLQGSVASMQQ
  263-  283 (28.95/ 7.05)	PQMQQQLKQQLLQQQLQQAKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.45|      20|      20|     189|     208|       3
---------------------------------------------------------------------------
   91-  110 (32.04/ 9.14)	GQLAPPRVHSMQQQQQQQQQ
  189-  208 (35.77/11.04)	STMQVIGMGSMQQNPVAPQQ
  212-  231 (33.63/ 9.95)	STMQQQGGVYMLQSNVNKHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.28|      22|      23|      29|      51|       4
---------------------------------------------------------------------------
   29-   51 (33.68/32.58)	Q.PKSDQLDNLKNfKLI.LER.IIAF
   53-   77 (25.60/17.95)	QvNKADIVPSFKE.KLVhYEKqIINF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00325 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KVAIQQGQLAPPRVHSMQQQQQQQQQQQQQLQPQTTQVQSHENQMNPQLESMNLQGSVASMQQNNMGNLNHYSMSLSGVSNAQQTMIDSLQPNSNMDSGTGNASSTMQVIGMGSMQQNPVAPQQVNMS
85
212










Molecular Recognition Features






MoRF SequenceStartStop




NANANA