Description | ATP-dependent DNA helicase |
Sequence | MEVGDVLQELLGVEVELQDVQDQIKVLLDRQEKLYERQSELKSLLEACEDVGSPVRDGASTSGEDWSGTFDWDARADDVKFNIFGIRKYRANQREIINAIMSRRDVLVIMAAGGGKSLCYQLPAILQEGVALVVSPLLSLIQDQVMGLAALGIPAHMLTSTTGKDNEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPSVPVVALTATATWKVQNDLMEMLQIPKCVKFVSTVNRPNLFYMVREKSSVAKVVIDEIAEFIRESYPNNESGIVYCFSRKECEQVAKELRDRGISADYYHADMDVNAREKVHLRWSNGKLQVIIGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRAADVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEAVQDCNGMCDNCAFSNEIKEIDVSGHAKLVISLLQDVREKDQRLTMLQLVDKIKTMQKELGSNLKKEQLEQLVIQLILDRVLKEEYQHTAYATNAYVTLGPLTKQVLQGKMMIKLEVLSDQKGMNDNIKHTKRGLTTSGLEFKLDELRKELSSIHGGILPHSVLTTQHISTISARKPSSIEELESIIGKLKAGKYGNRILEEVEKYEGSDQPDKNSSRKCQSIDHRASKRPKTKPLVLIETSEDEE |
Length | 708 |
Position | Unknown |
Organism | Eucalyptus grandis (Flooded gum) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.380 |
Instability index | 42.11 |
Isoelectric point | 6.99 |
Molecular weight | 80104.04 |
Publications | PubMed=24919147 |
Annotated function |
|
GO - Cellular Component | chromosome GO:0005694 IBA:GO_Central cytoplasm GO:0005737 IBA:GO_Central mediator complex GO:0016592 IBA:GO_Central |
GO - Biological Function | 3'-5' DNA helicase activity GO:0043138 IBA:GO_Central ATP binding GO:0005524 IEA:UniProtKB-KW four-way junction helicase activity GO:0009378 IBA:GO_Central nucleic acid binding GO:0003676 IEA:InterPro |
GO - Biological Process | DNA duplex unwinding GO:0032508 IBA:GO_Central DNA recombination GO:0006310 IBA:GO_Central DNA repair GO:0006281 IBA:GO_Central DNA unwinding involved in DNA replication GO:0006268 IBA:GO_Central double-strand break repair via homologous recombination GO:0000724 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP00322 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 181.83| 60| 211| 283| 350| 1 --------------------------------------------------------------------------- 283- 350 (94.67/92.33) LFYMVREKSSVAKV..VIDEIAEFIRESYPNnesgivycFSRKECEQ.VAKELRDRGISADYYHADMDVNA 495- 557 (87.17/65.53) LLQDVREKDQRLTMlqLVDKIKTMQKELGSN........LKKEQLEQlVIQLILDRVLKEEYQHTAYATNA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 124.58| 41| 118| 121| 166| 2 --------------------------------------------------------------------------- 121- 166 (55.57/61.26) QLPAIlqEGVALVVSPLLSlIQDQVMGLaaLGIPAHM.LTSTTGKDN 241- 282 (69.01/53.76) QFPSV..PVVALTATATWK.VQNDLMEM..LQIPKCVkFVSTVNRPN --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 185.59| 60| 269| 362| 433| 3 --------------------------------------------------------------------------- 362- 433 (88.51/90.49) KLQVIIGTVAFGMGINKpdvrfvIHHSLSKsmetyYQESGRAGRDGlPSECL.LYYRAADVPRQSSMVFYENS 644- 704 (97.08/66.48) ELESIIGKLKAGKYGNR......ILEEVEK.....YEGSDQPDKNS.SRKCQsIDHRASKRPKTKPLVLIETS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 176.84| 55| 155| 17| 73| 4 --------------------------------------------------------------------------- 17- 73 (86.08/67.80) LQDVQDQIKVLLDRQEKLyERQSELKSLLEACEDVG..SPVR.DGASTSGEdWSGTFDWD 174- 231 (90.76/61.19) LEKGEGELKILYVTPEKI.SKSKRFMSKLEKCHHAGrlSLIAiDEAHCCSQ.WGHDFRPD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) LEEVEKYEGSDQ 2) SSRKCQSIDHRASKRPKTKPLVLIETSEDEE | 662 678 | 673 708 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab