<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00317

Description Uncharacterized protein
SequenceMQRYHVANCGNAVNNSTIGGPSSRDTARAESPSIGSNFSLNSRRQFQLSPYKLKCEKEPLNSRLGPPDYHPQTTDCPEETLTKEYVQSGYKETVEGLEEAREISLSQAQVFSKPLVLKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLNKSAAFPEQRSFGEDFKKRWIEALSQPHKRLRSLGEHVPHGYRKKSLFEVLIKNNVPILRATWFIKVTYLNQVRPGSAVISSGVPDRSHLSRAELWTKDVIDYLQSLLDEFRRNNYNSNSHLRERSPQMLYAGPTQQKGEAASSTLDADEPSLHFKWWYMVRLLQWHHTEGLVLPSPIIDWVLGQLQDKELFETLQLLLPIIYAVIEVIVLSQTYVRTLVGVAVRFICEPSPGGSDLVDNSRREYTCSAVVEMLRYLILTVPDTFVALDCFPLPPNVVSHTVNDGGYLSKASEDVAKMEMCSAEVACLFRRKGFDAFYQAVSFGHVVSSIQRHADKLAKVVSSGNPSCGYARAVQALDKALVHGDLKGTYKFLFEDVSEEAVDGGWIAEVSPCLRASLKWIGSLKLSFIYSVFFLCEWATCDFRNSRTAPLADVNFSGRKDFSQVYVAVLFLKLKKRDLENQSRRRNDNVGGVTSHKGLSQENNFGRTSMLNVFENGNSPENVDKKSRRLSGGLNSPGPLHDILVCWIDQHKVPKGEGFERLQLLIVELTRCGIFDPPSYVRQLLISGVMGLSGHADRDRRMRHYRILKQLPGVLIHDALEEARIADRRQFLETMHVYLSERRLVLQELYGERRNLDNAHTSAHKKKHNIRSGPSPTSVDQWKAVESPSSSFYPKKADIEEVNTLISNLLQFPNSISVPLFMGTDESEGSIKRTAGSTCNKSDITDSSPGCEECRRVKKQKLTEERSAYIQVHSPIPSDDEDLWWVRKGPKSFESLKVDPPLKSTKQASRGRQKVVRKTQSLAQLAAARIEGSLGASTSHVCDSRTSCSHHGTGVDGEIPKSVDGIRVTHSCDVITVGKALKQLCIAKRRVVTVWLLDVVKQLIEEAEKTSAQVGQFNRNFTSLNDRSTLKWKLSEDELSNILYLLDVSDDLVSAVKFILWLLPKAFRTSSMAIHSGRNVLMPQRQVESHVCEIRETFLLSSLRRYESTLIAADLIPQALSASMDLVATVAASNARVSNTSAWAYARYLLKKYGNVTSVLEWRKTSKANRDKRLLAELESGRPSDGEFGFPLGVPAGVDDLDDFLRQKMGTGRLSRVGMNMREIVQRRVEEAFHFFSGKEKKVFAAGVPKGPSLEKGDDGFQISEQIVMELRECMMQTGGSFQEGDPSLVSSSISAIIGSIGPTLAKIPDFTTGSSCTNSPSSTSSLNVARQILRINITCLCLLRDFLGERQSRVFEIALATEASSALAGVFNPGKSSRNQYQLSPEAHDSNSSTSSVVGRAARVIAAVSALIIGAVIQGITSLERMVSVFRLKESIDVVQFMRSIRSNSNGSIRSPGTFKVESPIEGHVHWFRLLVGNCRTVSDGLVVELLGEPSIVALSRMQQTLPVGLVFPPAYAIMAFLMWRPFILSSNLAVREDMHQLYQSLSAAMSDALKHLPFRDVCLRDSVGLYDLISADTSDSEFASMLELNGTDLHLKSIAFVPLRARLFLDAIISCRIPALVTQDDRSRITGHGVLKDRFAENRTKLLDRIVHVLNTLQPAKFHWQWLELRLLLNEQALIDKLEAHDTTLVDAVRSLAPSSERAAVSENENTLIEIILTRLLVRPDAAPLFSEVVHLFGRSLQDSMLLLTKWFLEGHDVLFGRKTIRQRLMNIAESKGFSTKSQIWKHWGWSTSGVGTIANNDKKKHEVASIEEGEVVEEGVDPKKFSKGSIQVQLDAEGYSSRSMQQFATEKALIELVLPCIDQSSDESRNTFASDLIKQLNAIEQHINAIARVTSKNTGTTASGTEGPAGKSNNRKGMRGGSPGLARRQAAAAAAAAAAADSAPPPAALRASISLRLHFLLRLLPIICADREPLGRNMRHMLASVILRLLGNQLVYDYADLAIHPLQTSQCKREGDLPVEAPGHNAPSNFLGDTLFDRLLLVLHGLLSSSQPSWLKPKPTLKSAPEYIKDFAGIDKEAADNLLLLLSLRCNRPSHFQEHRQEI
Length2139
PositionKinase
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.250
Instability index49.75
Isoelectric point8.93
Molecular weight237768.93
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00317
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     967.80|     297|     344|      31|     374|       1
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   31-  351 (458.89/383.34)	SPSiGSNFSLNSRRQFQLSPYkLKCEKEPLnsrLGPPDYHpQTTDC...PEETLTKEYVQSGY.KETVEGLEEAREISLSQAQVFSKplvlKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGsllNKSAAFpeQRSFgEDFKKRWIEA.LSQPHKRL.RSLGEH.VPHGY.......RKKSLfevliKnNVPILRATWFIKVTYL.........N.QVRP..GSAVISSGVPDRSHLSRAELWTKDVIDYLQSLLDEFRRNNYNSNSHLRERSpQMLYAG..PTQQKG................EAASSTLDADEPSLhFKWWYMV..RLL.....QWHHTEGLVLPSP..IID....WV.LGQLQDKELFETLQLL
  384-  698 (399.21/298.19)	SPG.GSDLVDNSRREYTCSAV.VEMLRYLI...LTVPDTF.VALDCfplPPNVVSHTVNDGGYlSKASEDVAKMEMCSAEVACLFRR....KGFDAFYQAVSFGHVVSSIQRHADKLAKVVSSG...NPSCGY..ARAV.QALDKALVHGdLKGTYKFLfEDVSEEaVDGGWiaevspcLRASL.....K.WIGSLKLSFIYSVFFLcewatcdfrNsRTAP..LADVNFSGRKDFSQVYVAVLFLK...LKKRDLENQSRRRNDNVG.............G..VTSHKGlsqennfgrtsmlnvfENGNSPENVDKKS........R..RL..........SGGLNSPGP..LHDilvcWIdQHKVPKGEGFERLQLL
 1985- 2121 (109.69/56.06)	...................................................................................................................................................................................................LRASISLRLHFL.........L.RLLPiiCADREPLGRNMRH.......MLASVI..LRLLGNQLVYDYADLAIHPLQTS.QCKREGdlPVEAPG................HNAPSNFLGD..TL.FDRLLLVlhGLLsssqpSWLKPKPTLKSAPeyIKD....F...AGI.DKEAADNLLLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.30|      51|     168|    1271|    1327|       2
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 1203- 1254 (84.61/50.98)	RDKRLLAELESGRPS..DGEFGFPLGVPAgVDDLDDFLRQKMGT...GRLSRVGMNM
 1272- 1327 (78.69/64.07)	KEKKVFAAGVPKGPSleKGDDGFQISEQI.VMELRECMMQTGGSfqeGDPSLVSSSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.09|      32|      68|    1328|    1359|       3
---------------------------------------------------------------------------
 1328- 1359 (55.68/36.04)	SAIIGSIGPTLAKIPDFTTGSSCTNSPSSTSS
 1399- 1430 (55.41/35.84)	SALAGVFNPGKSSRNQYQLSPEAHDSNSSTSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     184.03|      56|     388|    1097|    1152|       5
---------------------------------------------------------------------------
 1097- 1152 (94.90/68.29)	PKAFRTSSM...AIHSGRNVLMPQRQV.ESHVCEIRETFLLSSLRRYESTLIAADLIPQA
 1490- 1549 (89.13/63.61)	PGTFKVESPiegHVHWFRLLVGNCRTVsDGLVVELLGEPSIVALSRMQQTLPVGLVFPPA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00317 with Med12 domain of Kingdom Viridiplantae
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