<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00313

Description Uncharacterized protein
SequenceMQRYHVANCGNAVNNSTIGGPSSRDTARAESPSIGSNFSLNSRRQFQLSPYKLKCEKEPLNSRLGPPDYHPQTTDCPEETLTKEYVQSGYKETVEGLEEAREISLSQAQVFSKPLVLKCKEAIRKRLRAINESRAQKRKAGQVYGVPLSGSLLNKSAAFPEQRSFGEDFKKRWIEALSQPHKRLRSLGEHVPHGYRKKSLFEVLIKNNVPILRATWFIKVTYLNQVRPGSAVISSGVPDRSHLSRAELWTKDVIDYLQSLLDEFRRNNYNSNSHLRERSPQMLYAGPTQQKGEAASSTLDADEPSLHFKWWYMVRLLQWHHTEGLVLPSPIIDWVLGQLQDKELFETLQLLLPIIYAVIEVIVLSQTYVRTLVGVAVRFICEPSPGGSDLVDNSRREYTCSAVVEMLRYLILTVPDTFVALDCFPLPPNVVSHTVNDGGYLSKASEDVAKMEMCSAEVACLFRRKGFDAFYQAVSFGHVVSSIQRHADKLAKVVSSGNPSCGYARAVQALDKALVHGDLKGTYKFLFEDVSEEAVDGGWIAEVSPCLRASLKWIGSLKLSFIYSVFFLCEWATCDFRNSRTAPLADVNFSGRKDFSQVYVAVLFLKLKKRDLENQSRRRNDNVGGVTSHKGLSQENNFGRTSMLNVFENGNSPENVDKKSRRLSGGLNSPGPLHDILVCWIDQHKVPKGEGFERLQLLIVELTRCGIFDPPSYVRQLLISGVMGLSGHADRDRRMRHYRILKQLPGVLIHDALEEARIADRRQFLETMHVYLSERRLVLQELYGERRNLDNAHTSAHKKKHNIRSGPSPTSVDQWKAVESPSSSFYPKKADIEEVNTLISNLLQFPNSISVPLFMGTDESEGSIKRTAGSTCNKSDITDSSPGCEECRRVKKQKLTEERSAYIQVHSPIPSDDEDLWWVRKGPKSFESLKVDPPLKSTKQASRGRQKVVRKTQSLAQLAAARIEGSLGASTSHVCDSRTSCSHHGTGVDGEIPKSVDGIRVTHSCDVITVGKALKQLCIAKRRVVTVWLLDVVKQLIEEAEKTSAQVGQFNRNFTSLNDRSTLKWKLSEDELSNILYLLDVSDDLVSAVKFILWLLPKAFRTSSMAIHSGRNVLMPQRQVESHVCEIRETFLLSSLRRYESTLIAADLIPQALSASMDLVATVAASNARVSNTSAWAYARYLLKKYGNVTSVLEWRKTSKANRDKRLLAELESGRPSDGEFGFPLGVPAGVDDLDDFLRQKMGTGRLSRVGMNMREIVQRRVEEAFHFFSGKEKKVFAAGVPKGPSLEKGDDGFQISEQIVMELRECMMQTGGSFQEGDPSLVSSSISAIIGSIGPTLAKIPDFTTGSSCTNSPSSTSSLNVARQILRINITCLCLLRDFLGERQSRVFEIALATEASSALAGVFNPGKSSRNQYQLSPEAHDSNSSTSSVVGRAARVIAAVSALIIGAVIQGITSLERMVSVFRLKESIDVVQFMRSIRSNSNGSIRSPGTFKVESPIEGHVHWFRLLVGNCRTVSDGLVVELLGEPSIVALSRMQQTLPVGLVFPPAYAIMAFLMWRPFILSSNLAVREDMHQLYQSLSAAMSDALKHLPFRDVCLRDSVGLYDLISADTSDSEFASMLELNGTDLHLKSIAFVPLRARLFLDAIISCRIPALVTQDDRSRITGHGVLKDRFAENRTKLLDRIVHVLNTLQPAKFHWQWLELRLLLNEQALIDKLEAHDTTLVDAVRSLAPSSERAAVSENENTLIEIILTRLLVRPDAAPLFSEVVHLFGRSLQDSMLLLTKWFLEGHDVLFGRKTIRQRLMNIAESKGFSTKSQIWKHWGWSTSGVGTIANNDKKKHEVASIEEGEVVEEGVDPKKFSKGSIQVQLDAEGYSSRSMQQFATEKALIELVLPCIDQSSDESRNTFASDLIKQLNAIEQHINAIARVTSKNTGTTASGTEGPAGKSNNRKGMRGGSPGLARRQAAAAAAAAAAADSAPPPAALRASISLRLHFLLRLLPIICADREPLGRNMRHMLASVILRLLGNQLVYDYADLAIHPLQTSQCKREGDLPVEAPGHNAPSNFLGDTLFDRLLLVLHGLLSSSQPSWLKPKPTLKSAPEYIKDFAGIDKEAADNLLNELDNMQLPDKIRWRIQAAMPILLPSLRCFVSCQPPSVPAAALTTVQSTISLPGASSGNLNLLQRNTVSSARSSATTTGKSRPVAPQQDYNMEVDAWTLLEDGVGGGPSSSGTAGIGSADNANLRAASWLKGAMRVRRADLMYVGAVDDDS
Length2270
PositionKinase
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.242
Instability index49.96
Isoelectric point8.89
Molecular weight251165.82
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00313
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.22|      25|      32|      91|     122|       1
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   91-  115 (38.80/29.84)	KETVEGLEEAREISLSQAQVFSKPL
  124-  148 (40.42/17.18)	RKRLRAINESRAQKRKAGQVYGVPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     344.77|     117|     344|     228|     375|       2
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  198-  257 (51.56/26.70)	.........................................................................................................KSLFEVLiKNNVPILRATWFIKVTYLNQV........rpgsavISSGVPDRSHL...SRAELWTKDVIDYL
  258-  407 (170.61/159.30)	QSLLDEFRRNNYNSNshlrerspqmlyaGPTQQKG................EAASSTLDADEPSlhfkwwymVRLlqwhhTEGLVLPSPIID....WV.LGQLQDKELFETL.QLLLPIIYAVIEVIVLSQTYVRTLV..GV..avrfICEPSPGGSDLvdnSRREYTCSAVVEML
  610-  722 (122.60/72.26)	RDLENQSRRRNDNVG.............GVTSHKGlsqennfgrtsmlnvfENGNSPENVDKKS........RRL.....SGGLNSPGPLHDilvcWIdQHKVPKGEGFERL.QLL..IVELTRCGIFDPPSYVRQLLisGV..................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     179.87|      57|     168|    1271|    1327|       3
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 1271- 1327 (100.33/69.58)	GKEKKVFAA.......GVPKG.PSLEKGDDGFQISEQI..VMELRECMMQTGGSFQEGDPSLVSSSI
 1433- 1499 (79.54/53.38)	GRAARVIAAvsaliigAVIQGiTSLERMVSVFRLKESIdvVQFMRSIRSNSNGSIRSPGTFKVESPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     390.11|     122|     394|    1107|    1232|       4
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 1107- 1232 (191.30/145.43)	IHSGRNVLMPQRQV.ESHVCEIRETFLLSSLRRYESTLIAADLIPQALSASMDLV..ATVAASNARVSNTSAWAYaRYLLKKYGNVTSVLEWRKTSKanRDKRLLAELESGRPSDGEFGFPLGVPaGVD
 1503- 1627 (198.81/136.29)	VHWFRLLVGNCRTVsDGLVVELLGEPSIVALSRMQQTLPVGLVFPPAYAIMAFLMwrPFILSSNLAVREDMHQLY.QSLSAAMSDALKHLPFRDVCL..RDSVGLYDLISADTSDSEFASMLELN.GTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.33|      22|     388|    1681|    1703|       5
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 1681- 1703 (36.93/23.76)	LLDRIVHVLNTLQPAKfHWQWLE
 2071- 2092 (38.41/20.03)	LFDRLLLVLHGLLSSS.QPSWLK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.73|      13|     347|      64|      90|       8
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   50-   62 (23.86/19.63)	PYKLKCEKEPLNS
   71-   83 (23.87/16.23)	PQTTDCPEETLTK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.83|      68|     260|    1916|    1992|      10
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 1916- 1992 (97.00/66.40)	LNAIEQhiNAIARVTSKNTGTTASGTEGPAGKSNN........RKGMrGGSPglarrqAAAAAAAAAAADSAPPPAA..LRASISLR
 2179- 2256 (103.83/51.89)	LNLLQR..NTVSSARSSATTTGKSRPVAPQQDYNMevdawtllEDGV.GGGP......SSSGTAGIGSADNANLRAAswLKGAMRVR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00313 with Med12 domain of Kingdom Viridiplantae
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