<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00310

Description Uncharacterized protein
SequenceMAMVSRPPVLTTSVDRIPIHEVGVSAIMASKGESVAEPSTPPAPVEDEKIYVEVGNNVKESKSTLIWAVRNSGGKNICVIYVLVPSQKMRMEGLGAEILVSQATDQMVRAHRETERRNMHILLDDYLQLCSQMGVQAEKQFTEAGSIEKGILELIQVHGIRKLVMGAAADKRYSKKMMERKSKKAISVRDEAPPSCHIWFICNGQLIHTREASTDQADTEVSSLRVPVNSTPDPGLPTLSSPTPGTPRRNDIPKLTNPVQDMFSRVFSSNSERHGLRPFVSSFPESPPEPISPLEREGSYHETEKVLRSHSQSSVGSSGSSIGATEMVSSPPVKPEMSESGVEMTQSNCNDEDPAPSIMLDVNMNDSLHNQLEQARTEAEDAKIDAFQEALRRAKAEEDFMDVVRKVKALESMHAEEHRRRKEIEEDLAKEEEALNKIKNERDEVVEELRIALDLQSSLESQIAETDQIVVELEQKIISAVKLLQSYRHERDELQIERDIALREAEELRRTQGDTSSGTFPQYFSEFSFLEIQEATQNFHPSLKIGEGGYGSIYKGSLRHTQVAIKRLHSHSMQGPQEFQQEVDVLSKVRHPNLVTLIGACPDAWALVYEYLPNGSLEDRLSCRDNTTPLSWQTRIRIATELCSVLIFLHSSKPHNIVHGDVKPANILLDANLESKLSDFGICRLLGDEKSSDNNTLLYRTDPKGTFAYMDPEFLSTGELSTKSDVYSFGIILLRLLTGRPPLGISKEVQYALSRKNLKSLLDPVAGDWPYLQAEQLANLALRCCEMNRRDRPDLGSDVWRVLEPMRASCGGFSSFRIGPDERCQPPPYFICPILQEVMQDPQVAADGFTYEAEALRGWLESGHDTSPMTNLQLAHRNLVPNRALRSAIQEWLQNH
Length896
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.05
Grand average of hydropathy-0.477
Instability index55.07
Isoelectric point5.38
Molecular weight100336.36
Publications
PubMed=24919147

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00310
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.09|      17|     185|     508|     527|       1
---------------------------------------------------------------------------
  508-  527 (23.05/23.19)	LRRTqgDtSSGTFPQYFSEF
  698-  714 (33.03/19.51)	LYRT..D.PKGTFAYMDPEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     174.69|      45|      46|     242|     287|       2
---------------------------------------------------------------------------
   40-   73 (29.08/11.42)	TPPAPV...EDEKIYVEVgNNVKESKSTliwaVRNSG...............
  240-  285 (75.55/45.51)	SSPTPGTP.RRNDIPKLT.NPVQDMFSR....VFSSNSeRHGLRPFVSSFPE
  286-  333 (70.07/37.95)	SPPEPISPlEREGSYHET.EKVLRSHSQ..ssVGSSGS.SIGATEMVSSPPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.86|      36|      43|     366|     404|       4
---------------------------------------------------------------------------
  366-  404 (49.56/54.23)	DSLHNQLEQARTEAEDaKIDAFQEALRRAKAEEDfmDVV
  411-  446 (59.29/48.80)	ESMHAEEHRRRKEIEE.DLAKEEEALNKIKNERD..EVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.49|      18|     404|     145|     163|       5
---------------------------------------------------------------------------
  145-  163 (26.83/23.73)	GSIEKGILELIQVhGIRKL
  551-  568 (32.67/22.77)	GSIYKGSLRHTQV.AIKRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00310 with Med32 domain of Kingdom Viridiplantae
Unable to open file!