<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00308

Description Uncharacterized protein
SequenceMAAAVGSLIMRRTLRPAMAPASLSASVEEDGLHAGGEFRWEEREGDRFGFNDIQTSECATEDATKDFDEILDELNDTSIPREQALGIMFSSDQTINSKQAAQSPQPITFFFDSFPEAHSDQPQSMAPKSEGKAVGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVFDAKRLIGRRFSDPTVQADMKHWPFRVVAGPGDKPMIAVSYKGEEKQFAPEEISSMVLTKMKEIAEAYLGQTVKNAVITVPAYFNDSQRQATKDAGAITGLNVMRIINEPTAAAIAYGLDKKGSRTGEKNVLIFDLGGGTFDVSLLTIDEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNARALRRLRTACERAKRTLSSTSQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKDEIERMVKEAEQYKAEDEEVKKKVEAKNSLENYAYNMRNTVRDEKFANKLNPADKQKIEKAIDEAIEWLDRNQLAEVDEFEDKLKELEGLCNPVIAKMYQGAGGDVPMGGGADMPNSYGAYSDKASSGGAGAGPKIEEVD
Length782
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.470
Instability index38.09
Isoelectric point4.99
Molecular weight85928.71
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00308
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     173.18|      54|     287|       3|      71|       1
---------------------------------------------------------------------------
   15-   71 (91.49/79.96)	RP.AMAPASLSASVeedGLHAGGEFR....WEEREGDRFGF..NDIQTSECATEDATKDFDEIL
  121-  159 (32.45/ 9.38)	QPqSMAPKSEGKAV...GIDLGTTYScvgvW...QNDRVEIiaND...................
  332-  367 (49.24/23.34)	.....................GGTFD....VSLLTIDE.GI..FEVKATAGDTHLGGEDFDNRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.23|      18|      75|     636|     653|       4
---------------------------------------------------------------------------
  636-  653 (30.20/19.87)	DKGRLSK.DEIERMVKEAE
  712-  730 (24.03/14.28)	DRNQLAEvDEFEDKLKELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.59|      13|      21|     166|     179|       5
---------------------------------------------------------------------------
  166-  179 (20.37/18.21)	PSYVAFtDTERLIG
  190-  202 (25.22/17.02)	PHNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.23|      20|      41|     461|     480|       6
---------------------------------------------------------------------------
  461-  480 (34.34/21.73)	VHDVVLVGGSTRIP.KVQQLL
  505-  522 (27.16/15.68)	VQAAILTGEGDE...KVQDLL
  539-  558 (26.73/15.32)	VM.TVLIPRNTTIPtKKEQVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.45|      14|      34|     620|     635|       7
---------------------------------------------------------------------------
  620-  635 (18.64/15.05)	AEDKTagVKNKITITN
  657-  670 (22.81/11.66)	AEDEE..VKKKVEAKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00308 with Med37 domain of Kingdom Viridiplantae
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