<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00307

Description Uncharacterized protein
SequenceMEHSFSGGSWNVIPSMASHSNVSTPSSHDHLYLQQQPPDLLSPPQQQQQQQQPQQPFHQFQTQLPQFQQHQQFQQQQQQQQPQRLVQQQPQPPPPPPQQHQSLASHFHLLHLMESLADAVENGTRDQHSDSLVTELSTQFEKCQQLLNSIAGSINSKAVTVEGQKRKLEEAGQMLNQRRDLIASYRNSVEELIKSEP
Length197
PositionMiddle
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.05
Grand average of hydropathy-1.035
Instability index68.57
Isoelectric point5.95
Molecular weight22512.56
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00307
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.51|      27|      27|      45|      71|       1
---------------------------------------------------------------------------
   21-   44 (31.91/ 6.28)	NV....STPSSHDHLYlQQQ..PPDLLSPP
   45-   71 (53.15/14.95)	QQQQQQQQPQQPFHQF.QTQ..LPQFQQHQ
   74-  101 (47.45/12.62)	QQQQQQQQPQRLVQQ..QPQppPPPPQQHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.69|      24|      26|     139|     162|       2
---------------------------------------------------------------------------
  139-  162 (38.46/25.88)	QFEKCQQLLNSIAGSINSKAVTVE
  167-  190 (37.23/24.87)	KLEEAGQMLNQRRDLIASYRNSVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00307 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEHSFSGGSWNVIPSMASHSNVSTPSSHDHLYLQQQPPDLLSPPQQQQQQQQPQQPFHQFQTQLPQFQQHQQFQQQQQQQQPQRLVQQQPQPPPPPPQQHQSLASHFH
1
108










Molecular Recognition Features






MoRF SequenceStartStop




1) HDHLYLQQQPPDLL
28
41