<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00304

Description Uncharacterized protein
SequenceMHAFLLMLLGVSFFKLFCLLIITLSLIYGTQNFGSSLPMQYRAVIPPQQGQTYLPMNSQHFRPAGQDQLPQFSHPMQQLPQRSSQPSYTPSSQALSMPYAQTNRPLSTNSAQPSAPPFHNPMPGVGGPGAPLGSSYAFAPSFGHQQNNVGAPSHIQPIAPMHAPVAGQPWLASGARGALPAMPIQQTGQQAPVTSPPDAAVNASNPSQQSASDWQEHEASNGKRYYYNKKTKQSSWEKPLELMTPIERADASTVWKEFTNADGRKYYYNKDTKQSVWSIPEELKLARELALKATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSPVPVTSALPLANATQTTIAGPSTTAGVPSSSAMVNDAGFQAVAVSAPPTTVSGSSSMSPAFGTANSSGASFQTVVSQDAAFSGDGASLQDIEEAKRGMAVAGKVNETPVEEKAPEDEPVVYPSKQEAKNAFKALLESVNVQSDWTWEQTMREIINDRRYSALKTLGERKQAFNEYLGQRRKVEAEERRVRQKKAKEEFTKMLEECTELTSSVKWSKAVTMFENDERFKAVERNRDREDLFENYMVELGRKEKEKAVEEHKHHVAEYRKYLESCDFIKVNSQWRKIVDRLEDDERCSRLEKIDRLLIYQDYVRDLEKEEEEQKKIQKEQLRRSERKNRDAFRKLMEEHIAAGTLNAKTLWHDYCLKVKDMSEYQAVASNTSGSTPKELFEDVMEELEKQYHDDKTRVKDAMKSGKISMASTWTFEDFKASILEDIGAPLISDVNSKLVYEELLERAKEKEEKEAKKRRHLADDFTELLYTIKEITTTSDWEECKPLFEDSHEFKLMGDESFSREIFEEYKAYLQEKAKEKGRKREEEKARKEKEREDKEKRKDKERKEKEKDREREKGKEKSKKDETDSETADLNDIHDYKDDKKKEKEKDRKHRKRHQTASDDVNSDRDEKDSKRSKKHGSDRKKSRKHAHSPESDVESRHKRHKRDHRDGSRRSGYEELEDGELGEDGEIQ
Length1008
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-1.020
Instability index55.38
Isoelectric point6.23
Molecular weight114317.02
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00304
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.34|      37|      38|     206|     242|       1
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  206-  242 (72.91/55.36)	PSQQS.ASD.WQEHEASNGKRYYYNKKTKQSSWEKPLEL
  245-  283 (63.43/46.99)	PIERAdASTvWKEFTNADGRKYYYNKDTKQSVWSIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.65|      15|      15|     865|     879|       2
---------------------------------------------------------------------------
  865-  879 (25.89/14.07)	RKEKERE.DKEKRKDK
  881-  896 (18.42/ 7.53)	RKEKEKDrEREKGKEK
  971-  985 (20.34/ 9.21)	SDVESRH.KRHKRDHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     473.64|      89|      89|     666|     754|       3
---------------------------------------------------------------------------
  415-  471 (42.59/17.72)	................QDIEE....AKrgmAVAGKVN.ETPVE..EKAPED.EP.VVYPSKQEAKNAF.KAllESVNVQSDW.....T...............................
  472-  531 (67.13/31.84)	........WEQTMREIINDRR....YS...AL..KTLGE.RKQAFNEYLGQRRKvEAEERRVRQKKA..KE..............................eF......TKMLEE...C
  532-  599 (77.07/37.56)	TELTSSVKWS....KAVTMFEnderFK...AVERNRD...REDLFENYMVELGR.K...EKEK........................AVEE...HKH.hvaeY......RKYLE...SC
  600-  676 (85.78/42.57)	DFIKVNSQWR....KIVDRLE....DD...ERCSRLEKIDRLLIYQDYVRDLEK.EEEEQKKIQKEQLrRS..ER............................knrdafRKLMEEHIAA
  677-  762 (130.78/68.46)	GTLNAKTLWHDYCLKVKDMSE....YQ...AVASNTSGSTPKELFEDVMEELEK.QYHDDKTRVKDAM.KS..GKISMASTW.....TFED...FKA...siL...........EDIGA
  766-  846 (70.29/33.66)	SDVNSKLVYEELLERAKEKEE....KE...A.......KKRRHLADDFTELL....Y.....TIKE.........ITTTSDWeeckpLFEDsheFKLmgdesF.....sREIFEEYKA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     186.94|      25|      25|      63|      87|       4
---------------------------------------------------------------------------
   63-   87 (47.81/23.95)	PAGQD.Q..LPQFSHPMQQLPQRSSQPS
   90-  114 (30.91/13.23)	PSSQAlS..MP.YAQTNRPLSTNSAQPS
  116-  130 (19.91/ 6.25)	..........PPFHNPM...PGVGGPGA
  131-  153 (29.51/12.34)	PLGSS.YafAPSFGH..QQ..NNVGAPS
  157-  170 (25.58/ 9.85)	PIA............PMH..APVAGQPW
  180-  204 (33.21/14.69)	PAMPI.Q..QTGQQAPVTSPPDAAVNAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.34|      28|      30|     904|     933|       5
---------------------------------------------------------------------------
  904-  933 (45.23/31.19)	SEtaDLNDIHDYKDDKKKEKE.KDRKHRKRH
  937-  965 (44.11/24.81)	SD..DVNSDRDEKDSKRSKKHgSDRKKSRKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.35|      16|      16|     320|     335|       6
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  320-  335 (27.09/16.51)	AAANAVSPVPVTSALP
  345-  360 (25.26/14.88)	AGPSTTAGVPSSSAMV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00304 with Med35 domain of Kingdom Viridiplantae
Unable to open file!