<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00303

Description Uncharacterized protein
SequenceMHAFLLMLLGVSFFKLFCLLIITLSLIYGTQNFGSSLPMQYRAVIPPQQGQTYLPMNSQHFRPAGQDQLPQFSHPMQQLPQRSSQPSYTPSSQALSMPYAQTNRPLSTNSAQPSAPPFHNPMPGVGGPGAPLGSSYAFAPSFGHQQNNVGAPSHIQPIAPMHAPVAGQPWLASGARGALPAMPIQQTGQQAPVTSPPDAAVNASNPSQQSASDWQEHEASNGKRYYYNKKTKQSSWEKPLELMTPIERADASTVWKEFTNADGRKYYYNKDTKQSVWSIPEELKLARELALKATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSPVPVTSALPLANATQTTIAGPSTTAGVPSSSAMVNDAGFQAVAVSAPPTTVSGSSSMSPAFGTANSSGASFQTVVSQDAAFSGDGASLQDIEEAKRGMAVAGKVNETPVEEKAPEDEPVVYPSKQEAKNAFKALLESVNVQSDWTWEQTMREIINDRRYSALKTLGERKQAFNEYLGQRRKVEAEERRVRQKKAKEEFTKMLEECTELTSSVKWSKAVTMFENDERFKAVERNRDREDLFENYMVELGRKEKEKAVEEHKHHVAEYRKYLESCDFIKVNSQWRKIVDRLEDDERCSRLEKIDRLLIYQDYVRDLEKEEEEQKKIQKEQLRRSERKNRDAFRKLMEEHIAAGTLNAKTLWHDYCLKVKDMSEYQAVASNTSGSTPKELFEDVMEELEKQYHDDKTRVKDAMKSGKVKISMASTWTFEDFKASILEDIGAPLISDVNSKLVYEELLERAKEKEEKEAKKRRHLADDFTELLYTIKEITTTSDWEECKPLFEDSHEFKLMGDESFSREIFEEYKAYLQEKAKEKGRKREEEKARKEKEREDKEKRKDKERKEKEKDREREKGKEKSKKDETDSETADLNDIHDYKDDKKKEKEKDRKHRKRHQTASDDVNSDRDEKDSKRSKKHGSDRKKSRKHAHSPESDVESRHKRHKRDHRDGSRRSGYEELEDGELGEDGEIQ
Length1010
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-1.017
Instability index55.18
Isoelectric point6.29
Molecular weight114544.33
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00303
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.82|      40|      44|     214|     256|       1
---------------------------------------------------------------------------
  130-  168 (51.44/28.20)	.....APLGSSYAFAPSfgHQQNNVGAPSHIQ.PIAPM.HAPVAGQ
  170-  204 (45.09/24.52)	WL...ASGARGALPAMP..IQQTGQQAPV..TSPPDAAvNAS....
  214-  256 (67.68/48.48)	WQeheASNGKRYYYNKK..TKQSSWEKPLELMTPIERA.DASTVWK
  263-  283 (22.61/ 7.58)	........GRKYYYNKD..TKQSVWSIPEEL...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.65|      15|      15|     867|     881|       2
---------------------------------------------------------------------------
  867-  881 (25.89/11.41)	RKEKERE.DKEKRKDK
  883-  898 (18.42/ 6.06)	RKEKEKDrEREKGKEK
  973-  987 (20.34/ 7.43)	SDVESRH.KRHKRDHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.31|      43|      43|     289|     331|       3
---------------------------------------------------------------------------
  289-  329 (62.40/33.41)	....LAL.KATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSPVP
  330-  374 (52.23/26.85)	VTsaLPLaNATQTTIAGPSTTAGVPSSS.AMVNDAGFQAVAVSAPP
  403-  444 (57.69/30.37)	QD..AAF.SGDGASLQDIEEAKRGMAVAGKVN.ETPVEEKAPEDEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.76|      64|      65|     523|     586|       4
---------------------------------------------------------------------------
  457-  514 (72.48/42.73)	.F..KALLE...S.VNVQSDWTWE....Q..TMREiiNDRRYSALKTLG.E...RKQAFNEY...LGQRRKVEA...EERR
  523-  586 (105.34/65.69)	EF.TKMLEE...C.TELTSSVKWS....KAVTMFE..NDERFKAVERNR.D...REDLFENYMVELGRKEKEKA..VEEHK
  591-  648 (83.81/50.65)	EY.RKYLES...C.DFIKVNSQWR....KIVDRLE..DDERCSRLEK.I.D...RLLIYQDYVRDLEKEE.......EEQK
  665-  729 (63.13/36.21)	AF.RKLMEEhiaA.GTLNAKTLWHdyclKVKDMSE......YQAVASNT.SgstPKELFEDVMEEL.....EKQ..YHDDK
  753-  800 (30.12/13.15)	DFkASILED...IgAPLISDVNSK....LVYEELL..ERAKEKEEKEAK.K...RRHLADD....................
  801-  865 (76.88/45.81)	.F.TELLYT...I.KEITTTSDWE....ECKPLFE..DSHEFKLMGDESfS...RE.IFEEYKAYLQEKAKEKGrkREEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.15|      24|      26|      63|      87|       5
---------------------------------------------------------------------------
   63-   87 (43.79/27.62)	PAGQD.QLPqFSHPMQQLPQRSSQPS
   90-  114 (37.36/18.80)	PSSQAlSMP.YAQTNRPLSTNSAQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.34|      28|      30|     906|     935|       6
---------------------------------------------------------------------------
  906-  935 (45.23/29.83)	SEtaDLNDIHDYKDDKKKEKE.KDRKHRKRH
  939-  967 (44.11/23.74)	SD..DVNSDRDEKDSKRSKKHgSDRKKSRKH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00303 with Med35 domain of Kingdom Viridiplantae
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