<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00303

Description Uncharacterized protein
SequenceMHAFLLMLLGVSFFKLFCLLIITLSLIYGTQNFGSSLPMQYRAVIPPQQGQTYLPMNSQHFRPAGQDQLPQFSHPMQQLPQRSSQPSYTPSSQALSMPYAQTNRPLSTNSAQPSAPPFHNPMPGVGGPGAPLGSSYAFAPSFGHQQNNVGAPSHIQPIAPMHAPVAGQPWLASGARGALPAMPIQQTGQQAPVTSPPDAAVNASNPSQQSASDWQEHEASNGKRYYYNKKTKQSSWEKPLELMTPIERADASTVWKEFTNADGRKYYYNKDTKQSVWSIPEELKLARELALKATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSPVPVTSALPLANATQTTIAGPSTTAGVPSSSAMVNDAGFQAVAVSAPPTTVSGSSSMSPAFGTANSSGASFQTVVSQDAAFSGDGASLQDIEEAKRGMAVAGKVNETPVEEKAPEDEPVVYPSKQEAKNAFKALLESVNVQSDWTWEQTMREIINDRRYSALKTLGERKQAFNEYLGQRRKVEAEERRVRQKKAKEEFTKMLEECTELTSSVKWSKAVTMFENDERFKAVERNRDREDLFENYMVELGRKEKEKAVEEHKHHVAEYRKYLESCDFIKVNSQWRKIVDRLEDDERCSRLEKIDRLLIYQDYVRDLEKEEEEQKKIQKEQLRRSERKNRDAFRKLMEEHIAAGTLNAKTLWHDYCLKVKDMSEYQAVASNTSGSTPKELFEDVMEELEKQYHDDKTRVKDAMKSGKVKISMASTWTFEDFKASILEDIGAPLISDVNSKLVYEELLERAKEKEEKEAKKRRHLADDFTELLYTIKEITTTSDWEECKPLFEDSHEFKLMGDESFSREIFEEYKAYLQEKAKEKGRKREEEKARKEKEREDKEKRKDKERKEKEKDREREKGKEKSKKDETDSETADLNDIHDYKDDKKKEKEKDRKHRKRHQTASDDVNSDRDEKDSKRSKKHGSDRKKSRKHAHSPESDVESRHKRHKRDHRDGSRRSGYEELEDGELGEDGEIQ
Length1010
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-1.017
Instability index55.18
Isoelectric point6.29
Molecular weight114544.33
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00303
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.82|      40|      44|     214|     256|       1
---------------------------------------------------------------------------
  130-  168 (51.44/28.20)	.....APLGSSYAFAPSfgHQQNNVGAPSHIQ.PIAPM.HAPVAGQ
  170-  204 (45.09/24.52)	WL...ASGARGALPAMP..IQQTGQQAPV..TSPPDAAvNAS....
  214-  256 (67.68/48.48)	WQeheASNGKRYYYNKK..TKQSSWEKPLELMTPIERA.DASTVWK
  263-  283 (22.61/ 7.58)	........GRKYYYNKD..TKQSVWSIPEEL...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.65|      15|      15|     867|     881|       2
---------------------------------------------------------------------------
  867-  881 (25.89/11.41)	RKEKERE.DKEKRKDK
  883-  898 (18.42/ 6.06)	RKEKEKDrEREKGKEK
  973-  987 (20.34/ 7.43)	SDVESRH.KRHKRDHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     172.31|      43|      43|     289|     331|       3
---------------------------------------------------------------------------
  289-  329 (62.40/33.41)	....LAL.KATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSPVP
  330-  374 (52.23/26.85)	VTsaLPLaNATQTTIAGPSTTAGVPSSS.AMVNDAGFQAVAVSAPP
  403-  444 (57.69/30.37)	QD..AAF.SGDGASLQDIEEAKRGMAVAGKVN.ETPVEEKAPEDEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.76|      64|      65|     523|     586|       4
---------------------------------------------------------------------------
  457-  514 (72.48/42.73)	.F..KALLE...S.VNVQSDWTWE....Q..TMREiiNDRRYSALKTLG.E...RKQAFNEY...LGQRRKVEA...EERR
  523-  586 (105.34/65.69)	EF.TKMLEE...C.TELTSSVKWS....KAVTMFE..NDERFKAVERNR.D...REDLFENYMVELGRKEKEKA..VEEHK
  591-  648 (83.81/50.65)	EY.RKYLES...C.DFIKVNSQWR....KIVDRLE..DDERCSRLEK.I.D...RLLIYQDYVRDLEKEE.......EEQK
  665-  729 (63.13/36.21)	AF.RKLMEEhiaA.GTLNAKTLWHdyclKVKDMSE......YQAVASNT.SgstPKELFEDVMEEL.....EKQ..YHDDK
  753-  800 (30.12/13.15)	DFkASILED...IgAPLISDVNSK....LVYEELL..ERAKEKEEKEAK.K...RRHLADD....................
  801-  865 (76.88/45.81)	.F.TELLYT...I.KEITTTSDWE....ECKPLFE..DSHEFKLMGDESfS...RE.IFEEYKAYLQEKAKEKGrkREEEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.15|      24|      26|      63|      87|       5
---------------------------------------------------------------------------
   63-   87 (43.79/27.62)	PAGQD.QLPqFSHPMQQLPQRSSQPS
   90-  114 (37.36/18.80)	PSSQAlSMP.YAQTNRPLSTNSAQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.34|      28|      30|     906|     935|       6
---------------------------------------------------------------------------
  906-  935 (45.23/29.83)	SEtaDLNDIHDYKDDKKKEKE.KDRKHRKRH
  939-  967 (44.11/23.74)	SD..DVNSDRDEKDSKRSKKHgSDRKKSRKH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00303 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGFQAVAVSAPPTTVSGSSSMSPAFGTANSSGA
2) AGQDQLPQFSHPMQQLPQRSSQPSYTPSSQALSMPYAQTNRPLSTNSAQPSAPPFHNPMPGVGGPGAPLGSSYAFAPSFGHQQNNVGAPSHIQPIAPMHAPVAGQPWLASGARGALPAMPIQQTGQQAPVTSPPDAAVNASNPSQQSASDWQEHEASNGKRYYYN
3) AKEKGRKREEEKARKEKEREDKEKRKDKERKEKEKDREREKGKEKSKKDETDSETADLNDIHDYKDDKKKEKEKDRKHRKRHQTASDDVNSDRDEKDSKRSKKHGSDRKKSRKHAHSPESDVESRHKRHKRDHRDGSRRSGYEELEDGELGEDGEIQ
4) ELALKATGEGLTESGTTAQGPAASDSGSTEAPAAANAVSP
5) IEEAKRGMAVAGKVNETPVEEKAPEDEPVVYPS
363
64
854
288
417
395
228
1010
327
449










Molecular Recognition Features






MoRF SequenceStartStop




1) EELEDGELGEDGEIQ
2) RHKRHK
3) SRKHAH
996
978
964
1010
983
969