<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00300

Description Uncharacterized protein
SequenceMQSVFRLSFTICCSIWISSADMYRVMRKYWSILNITLSDVRDFVHADALYIFAFPPSKQPLATPSPPNFLSDYKLHSLAFGSAQKGMIVQEDEEDQEIINQKFKTCKLELKRKMKECSITPKALSTFRPNDLHDLAHSHRSRPTSLAKPSPSVARLRSHRNRRRCRRRRRRRRQIMNRGGGAGAGLGSGSGPTAAAAAAAAQKQKTLLQRVENDIGNIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQGEKSDRTLSRIAEEAAASLKELESHYYSSLQRTTHPTES
Length331
PositionHead
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.517
Instability index57.96
Isoelectric point9.94
Molecular weight37332.17
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00300
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.72|      27|      50|     207|     256|       1
---------------------------------------------------------------------------
  197-  225 (40.06/64.93)	AAAAAQKQktLLQRV.ENDIGNIVDNFSHL
  249-  278 (33.66/10.42)	AARMVQAAdsLLKLVsELKQTAIFSGFASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.81|      28|      82|      35|      66|       2
---------------------------------------------------------------------------
   35-   66 (46.48/41.88)	IT...LSDVRdfvhADALYIFAFPPSKQP..LATPSP
  119-  151 (43.33/27.99)	ITpkaLSTFR....PNDLHDLAHSHRSRPtsLAKPSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00300 with Med22 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RPNDLHDLAHSHRSRPTSLAKPSPSVARLRSHRNRRRCRRRRRRRRQIMNRGGGAGAGLGSGSGPTAAAAAAAAQK
128
203










Molecular Recognition Features






MoRF SequenceStartStop




1) LYIFAF
49
54