<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00299

Description Uncharacterized protein
SequenceMEGHNNPVGSAQGGAPAVEGGDWRRILTLESRRRVVGSIMENLMRFLPRRGQEGLPEVQNLAMHLEERLFAAASSKEDYIKRISLKMLQIERCQQNKGANSLLANNTSGASNKPSDPGTWPQIQNQSQSNPNRAAVNQSQAHHSRQIHGPEQQLKQQQSQNPQQHLYNQQSPRPAMKQNFHNSSPATQSQPPQQSVLQTGPVTQQIVMQSSPLSSLHQSQLSCTQQSIQSMLQQHQEPVVRPQHQTQHTSAYPVPSQQQNIGQQASVLNMPRNNFINQHSSLMNMPQQLQNDIPNQVRQQYSLVVLKLGAQVDVSELQQQQVKQGAMQEPSNSLPSGSYHSGMQRSLQTSRSSMQHQGMTNQQKHSFPSQMPLPGTSKSLDSISQTDTACTGDWQEEVFRKIIDMKRLYLSELEEIHSSVSLRLCQFFSLPVVFMSSQIVSIPQSPNSGQYQKVQEFKKMVGRLISFLGVLKSKIPPSIKDNLSSWEKTILNVISANRARGLSLLQQPHVPPPPPHMQFMPPEQSPAQFPSFNHLNQRREQRMLPNQQLNQQFQECLVQPQLMQKQQISQQLPACLQTYQMSQPDQMGNSNDLKTRLGTGVRPGSVSQHPRLSGYRPSHLDQQLKPGTSLPKSSRQLLPVASIQISEHPSPEIDKHKLLTASTKTGMLLQSANSPFMVPSPASPLGLSPMPVDAEKSISGLSSLSNGGNTGQLQTDDALASTPPVSTGTPGISISPLLAELSSPDGAPWKSAKTASGKSSVTEQPVERLIRAVKSASHQALESAVGDIKSLVRGNDCLAGTAQGSGSRTAVGEDLAATLKCHLPSQNSNLQDEISGTRKLKRYVSAMPANLAPSPGSMNDSFAQRTASEISDIESTASSSIKRPKYEANYNLWGEIKQINRQLILTVVDISDEEVDSHAASAFTKVGEGTIVKCSFTGVGISPNLRSETTSSKMSLIQPLWLLLPMNYPNCSPILLDKLPVDVSREAEDLSAKAKSMLGRALRMLPQPLSLGGIALSWEESVRAVVLDFARQSGGGNFSSKYGAWEQCS
Length1049
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.04
Grand average of hydropathy-0.568
Instability index69.36
Isoelectric point9.24
Molecular weight114944.51
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00299
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     221.94|      38|      38|     573|     610|       1
---------------------------------------------------------------------------
  573-  610 (70.45/41.34)	PACLQTYQMSQPDQMGNS.NDL....KTRLGTGVRP....GSVSQHP
  617-  649 (51.24/27.66)	PSHLD..QQLKP...GTS.LPK....SSRQLLPVAS....IQISEHP
  660-  700 (35.53/16.47)	TASTKTGMLLQS...ANS.PFMvpspASPLGLSPMPvdaeKSISG..
  709-  736 (40.62/20.09)	....NTGQLQTDDALAST.PPV....ST..GT...P....G.ISISP
  740-  765 (24.10/ 8.33)	.......ELSSPD..GAPwKSA....KT..ASG..K....SSVTEQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.76|      28|      30|     177|     205|       2
---------------------------------------------------------------------------
  115-  134 (27.67/ 8.33)	......SD...PGTWPQIQNQS..QSNP.NRA
  177-  205 (49.44/25.11)	KQNFHNSS...PATQSQPPQQSVLQTGPvTQQ
  244-  271 (29.53/ 9.22)	HQTQHTSAypvPSQQQNIGQQASVLNMP....
  273-  288 (24.12/ 6.16)	.NNFIN.............QHSSLMNMP..QQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.70|      36|      39|     841|     879|       3
---------------------------------------------------------------------------
  841-  879 (53.58/45.32)	KR..YvsAMPANLAPSPGSMNDSFAQrTASEISD..IESTASS
  882-  921 (53.12/33.80)	KRpkY..EANYNLWGEIKQINRQLIL.TVVDISDeeVDSHAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.41|      26|     370|     140|     173|       4
---------------------------------------------------------------------------
  140-  169 (40.94/24.38)	QahHSRQIhgPEQQLKQQ......QSQNPQQHLYNQ
  539-  570 (39.47/16.71)	R..EQRML..PNQQLNQQfqeclvQPQLMQKQQISQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.03|      26|      32|     323|     351|       5
---------------------------------------------------------------------------
  323-  348 (47.23/25.98)	KQGAMQEPSNSLPSGSYHSGMQRSLQ
  356-  381 (48.80/20.30)	HQGMTNQQKHSFPSQMPLPGTSKSLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.10|      26|      34|     443|     476|       7
---------------------------------------------------------------------------
  392-  439 (31.58/19.52)	GDWQE.EVFRKIIDmkrlylseleeihssvslRLCQFFSLpvvfMSSQI
  449-  475 (40.53/22.29)	GQYQKvQEFKKMVG..................RLISFLGV....LKSKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.96|      26|      33|     772|     801|       8
---------------------------------------------------------------------------
  772-  801 (40.15/32.58)	AVKSASHqaleSAVG.DIKS.....LVRGN....DCLAGT
  802-  837 (29.81/15.48)	AQGSGSR....TAVGeDLAAtlkchLPSQNsnlqDEISGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.30|      11|      18|     290|     300|       9
---------------------------------------------------------------------------
  290-  300 (20.02/12.75)	QNDIPNQVRQQ
  311-  321 (18.28/10.85)	QVDVSELQQQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00299 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LQQQQVKQGAMQEPSNSLPSGSYHSGMQRSLQTSRSSMQHQGMTNQQKHSFPSQMPLPGTSKSLDS
2) LQSANSPFMVPSPASPLGLSPMPVDAEKSISGLSSLSNGGNTGQLQTDDALASTPPVSTGTPGISISPLLAE
3) LSLLQQPHVPPPPPHMQFMPPEQSPAQFPSFNHLNQRREQRMLPNQQLN
4) PACLQTYQMSQPDQMGNSNDLKTRLGTGVRPGSVSQHPRLSGYRPSHLDQQLKPGTSLPKSSRQLLPVASIQISEHPSPEIDKHKLLTASTKTG
5) QQNKGANSLLANNTSGASNKPSDPGTWPQIQNQSQSNPNRAAVNQSQAHHSRQIHGPEQQLKQQQSQNPQQHLYNQQSPRPAMKQNFHNSSPATQSQPPQQSVLQTGPVTQQIVMQSS
6) SPDGAPWKSAKTASGKSSVTEQPVERLIRAVK
7) TQQSIQSMLQQHQEPVVRPQHQTQHTSAYPVPSQQQNIGQQASVLNMPRNNFINQHSSLMNMPQQLQNDIP
317
669
502
573
94
743
224
382
740
550
666
211
774
294










Molecular Recognition Features






MoRF SequenceStartStop




NANANA