<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00298

Description Uncharacterized protein
SequenceMATPAWLQQEVEPAAVSASAPSPAATAPASADASGCVGDSKPEPAQAKFANAPGFVVPAPSFSYTVLSNASAAPAAPNQVMNMNPPNFSSVVQPPVPGISPPTGPSFSYNVSQNAVGIHGKNVQQASTNTSGNVAPDAGVSPSASTTSQLDWLPGQPPQKDVVSNISAATAWTSSLRPFSLSTGLPGTSGLPGPPGLTLPLPVSSNPVIPSLTSDPSASSLRPNIVGGPVATNPGVQSQVYSGYPSIPTMPANPQPLWLQPPQMSGMARPPFVPYHAVLPAPFPFPAHGMPISSMPSPDPQPPGVTPSGSAGGMLSSSVPGQQVAGNSAMQTEVQPLADDTSKHVNGKNEAAANEQLDTWTAHKADSGVVYYYNALTGESTYEKPACFKGELDNVASKAAPIATEKLAGTDWEIVTMNDGRKYYYNHKTKLSSWQIPIEVGELKKKQDDNSSKENLISVASANPNDKGSAPISLSAPAINTGGREATALRTSSVLGPSSSSALDLIKKKLQESGTPGNSLPVPAASGAATSELNGSKSAEGTSKVLQSDGSKDKVKDNRDGNMSDSSSDSEDADSGPTKEERIRQFKEMLKERGVAPFSKWEKELPKIVFDQRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIERFKQLLEEASQDIDHTTDYYTFRKKWGNDPRFEALDRKDRENLLNERVLPLKKAAEERAQAMRAAATSSFKSLLRDRGDITVNSRWSRVKDSLRDDPRYKSVKHEDREALFNEYIAELKAVEDREEKEAKAKREEQEKLKERERELRKRKEREEQEMERVRVKIRRKEAIASFQALLVETIKDPQASWTESKVKLDKDPQGRASNPDLDAADTEKLFREHSKLLHERCSNEFRALLSEVITLEAASREMEDGKTMVNSWSTAKRLLKPDPRYNKMPRKEREALWRRYVEELQRKQKSGDDDREEKNVDTKGRSAANAGRIPTGSRRAHDQR
Length982
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.762
Instability index49.86
Isoelectric point8.66
Molecular weight107006.27
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00298
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     472.22|      66|      66|     644|     709|       1
---------------------------------------------------------------------------
  583-  639 (72.96/46.87)	......IRQFKEMLKE..RGVAPFSKWEKELPKIVF.......DQRFKA....IPSySARRSLFEH..YVKT..RAEEER
  644-  709 (106.58/72.26)	AAQKAAIERFKQLLEEASQDIDHTTDYYTFRKKWGN.......DPRFEA....LDR.KDRENLLNE..RVLPLKKAAEER
  712-  775 (96.79/64.87)	AMRAAATSSFKSLLRDRG.DITVNSRWSRVKDSLRD.......DPRYKS....VKH.EDREALFNE..YIAEL.KAVEDR
  780-  812 (47.73/27.83)	A..KAKREE.QEKLKERERELR................................KR.KEREEQEME..RV.........R
  815-  884 (80.26/52.39)	IRRKEAIASFQALLVETIK..DPQASWTESKVKLDK.......DPQGRAsnpdLDA.ADTEKLFREhsKLLHERCSNEFR
  885-  944 (67.91/43.06)	ALLSEVIT.....LEAASREME...DGKTMVNSWSTakrllkpDPRYNK....MPR.KEREALWRR..YVEELQR.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     291.53|      44|      44|      27|      70|       2
---------------------------------------------------------------------------
   24-   65 (63.86/25.39)	..AAT......APASADASGCVGDSK.....PEPAQAKFANAPG....F..VVP..........APSFS........YT
   66-  110 (40.15/13.51)	VLSNA......SAAPA.A...............PNQVMNMNPPN....FssVVQppvpgispptGPSFS........YN
  111-  147 (29.17/ 8.00)	VSQNA.....................vgihgKNVQQAS.TNTSG....N..VAP......dagvSPSAS........TT
  162-  207 (51.98/19.44)	VVSNIsaatawTSSLRPFSLSTG.........LPGTSGLPGPPG....L..TLP..........LPVSS........NP
  208-  245 (30.29/ 8.56)	VIPSL.....tSDPSASS......LR.....PNIVGGPVATNPG.........................vqsqvysgYP
  246-  282 (47.32/17.10)	SIPTM......PANPQPLWL.....Q.....P.PQMSGMARPPFvpyhA..VLP..........AP.............
  292-  311 (28.76/ 7.79)	.ISSM......P...........S.......PDPQ......PPG.......VTP..........SGSA...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     257.19|      60|      62|     389|     448|       3
---------------------------------------------------------------------------
  345-  384 (54.89/27.81)	......VNGKNEAAANEQL..D....TWTAHKADSGVVYYYNALTGESTYE................K
  389-  448 (102.53/58.37)	KGELDNVASKAAPIATEKLAGT....DWEIVTMNDGRKYYYNHKTKLSSWQIPIEVGEL...KKK.QD
  453-  512 (72.21/38.92)	KENLISVAS.ANP.NDKGSAPI....SLSAPAINTGGREATALRT..SSVLGPSSSSALdliKKKlQE
  516-  552 (27.56/10.28)	PGNSLPVPAASGA.ATSELNGSksaeGTSKVLQSDGSK..............................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00298 with Med35 domain of Kingdom Viridiplantae
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