<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00296

Description Uncharacterized protein
SequenceMANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSHGTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLRPHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGVPSGDQVNLPSESQNTTPVTVLPVTSEQPAVSAALALESSGQHNSSEVVQRIQTDWIEHTSPAGRKYYYNKKTKQSTWQKPFELMTVTERADASTDWKEFTSSDGRTYYYNKATKQSKWEMPAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPLNASGDTESAVVAESEEISVPVPTSTLVAVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTPMIDSKKSTIQDVPWSAGVSVQDKEAKNIEVSAEGAETLVEEKLTNSEPSPYATKLEAKAAFNALLENANIGSDWTWERAMRIIINDKRYGALKTLGERKEAFNEFVGQRKKQDAEGRRFQQKKARDNFKQMLEECRELTSSSRWSKVVTLFEEDERFKAIERDKDRKDIFESFIVELEKKERERSLEERKKNMREYRQFLESCDFIKASSQWRKLQDRLEADERCSRLEKMDRLEIFQDYLHDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLMEEHVAAGTLTAKTLWRDYYMMVKDLPAYMAVASNTAGSTPKDLFEDVAEELQKQYEEDKSQVDDAVKIRKISLTSTWTVEGLKASIADDIRGTPISDINFKLVFDDLLERARKKEERVVKKRKRLGDKFFDLLTTIREITPSSTWDECKQLVENSHEYRTFLKST
Length859
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.782
Instability index57.01
Isoelectric point5.51
Molecular weight96640.04
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00296
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     301.23|      54|      61|      81|     134|       1
---------------------------------------------------------------------------
   11-   58 (53.74/20.94)	...QP.LQ....PPvvgsadPPrnfTQPA..PV..QPWP....ALPPQQPQQFVST..VP.........QHFqTP
   59-   87 (47.65/17.82)	SHGTV.LMNIgLPS......AP......................LHP.........QFPP.......PVQHL.AP
   88-  142 (99.35/44.29)	RPGQP.VQNV.LPP......PP...PGPL..PISQQNKPMASESLRPHQPSGLVSNNFMP.......AGSGLrAP
  152-  203 (61.29/24.80)	HGGQQ.QGNF.VSP......RP...PS.LyhQMSQ...PQAS.GV....PSGDQVN..LPsesqnttPVTVL.PV
  204-  243 (39.19/13.50)	TSEQPaVSAA.LAL......ES...SGQH..NSSEVVQRIQTDWIEHTSPAG.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     478.55|      65|      65|     540|     604|       2
---------------------------------------------------------------------------
  416-  457 (42.69/19.21)	.............DGTTPMID..S...KKSTIQDVPWS..AGVSV...........QD...KEAKNI......EVSAE.GAET
  476-  536 (82.58/43.14)	EA.......KAA...FNALLE..N...A.NIGSDWTWE..RAMRIIINDKRYGALKTL...GERKEAFNEFVGQRKKQ.DAEG
  540-  604 (100.65/53.98)	QQ.......KKARDNFKQMLE..E...CRELTSSSRWS..KVVTLFEEDERFKAIERD...KDRKDIFESFIVELEKK.ERER
  608-  671 (94.46/50.27)	ER.......KKNMREYRQFLE..S...CDFIKASSQWR..KLQDRLEADERCSRLEK....MDRLEIFQDYLHDLEKE.EEEQ
  675-  753 (66.36/33.41)	QKeemrkaeRKNRDEFRKLME..EhvaAGTLTAKTLWR..DYYMMVKDLPAYMAVASNtagSTPKDLFEDVAEELQKQyEEDK
  755-  811 (50.49/23.89)	.................QVDDavK...IRKISLTSTWTveGLKASIADDIRGTPI.SD...INFKLVFDDLLERARKK.E.ER
  815-  853 (41.32/18.39)	KR.......KRLGDKFFDLLT..T...IREITPSSTWD..ECKQLVENSHEYR..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.14|      27|      38|     244|     270|       3
---------------------------------------------------------------------------
  244-  270 (49.78/27.18)	RKYYYNKKTKQSTWQKPFELMTVTERA
  285-  311 (47.60/25.69)	RTYYYNKATKQSKWEMPAELKLAREEA
  312-  336 (29.76/13.52)	KRKLAPGTQSESLPSSSTSLVPVNE..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00296 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTPMIDSKKST
2) EMPAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPLNASGDTESAVVAESEEI
3) MANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSHGTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLRPHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGVPSGDQVNLPSESQNTTPVTVLPVTSEQ
388
299
1
428
377
207










Molecular Recognition Features






MoRF SequenceStartStop




1) AGRKYYYNKK
242
251