<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00295

Description Uncharacterized protein
SequenceMANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSHGTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLRPHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGVPSGDQVNLPSESQNTTPVTVLPVTSEQPAVSAALALESSGQHNSSEVVQRIQTDWIEHTSPAGRKYYYNKKTKQSTWQKPFELMTVTERADASTDWKEFTSSDGRTYYYNKATKQSKWEMPAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPLNASGDTESAVVAESEEISVPVPTSTLVAVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTPMIDSKKSTIQDVPWSAGVSVQDKEAKNIEVSAEGAETLVEEKLTNSEPSPYATKLEAKAAFNALLENANIGSDWTWERAMRIIINDKRYGALKTLGERKEAFNEFVGQRKKQDAEGRRFQQKKARDNFKQMLEECRELTSSSRWSKVVTLFEEDERFKAIERDKDRKDIFESFIVELEKKERERSLEERKKNMREYRQFLESCDFIKASSQWRKLQDRLEADERCSRLEKMDRLEIFQDYLHDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLMEEHVAAGTLTAKTLWRDYYMMVKDLPAYMAVASNTAGSTPKDLFEDVAEELQKQYEEDKSQVDDAVKIRKISLTSTWTVEGLKASIADDIRGTPISDINFKLVFDDLLERARKKEERVVKKRKRLGDKFFDLLTTIREITPSSTWDECKQLVENSHEYSSIGDDIYCQDIFEEYITKLKDHETRKHKEEKAEREKKKRGKEGKRGKDRREKDRYDREEEESRDNGADSDREILSETRASYKKKKSGEDRERKRHRHIHRTSDCMDIAEAEHSEKYHRHNGDHKKATQVSSISSVS
Length989
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.946
Instability index57.17
Isoelectric point5.88
Molecular weight112117.68
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00295
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     281.25|      54|      61|      81|     134|       1
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   44-   76 (38.74/13.45)	PQQFVST..VP.........QHFqTP.........SHGTV.LMNIgLPSAP...................LHP..
   77-  123 (85.52/37.07)	.......QFPP.......PVQHL.AP.........RPGQP.VQNV.LPPPPPGPL..PISQQNKPMASESLRPHQ
  124-  180 (55.45/21.88)	PSGLVSNNFMP.......AGSGLrAPlsssytfasHGGQQ.QGNF.VSPRPPS.LyhQMSQ...PQAS.GV....
  181-  240 (61.53/24.95)	PSGDQVN..LPsesqnttPVTVL.PV.........TSEQPaVSAA.LALESSGQH..NSSEVVQRIQTDWIEHTS
  317-  363 (40.01/14.09)	P.GTQSESLPS.......SSTSL.VPvnepdgadiSSSTS.QGPT.SSPVPAAPL..NAS...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     532.76|      65|      65|     540|     604|       2
---------------------------------------------------------------------------
  416-  468 (38.13/17.68)	..............DGTTPMID.S...K........KSTIQDVPWSAGVSV..............QD...KEA....KNI.....EVSaegaeTLVEE...............KLT.NSEP
  472-  536 (74.43/41.48)	AT.......KlEAKAAFNALLE.N...A.........NIGSDWTWERAMRIIIND...KRYGALKTL...GER....KEA.....FNE.....FVGQR...............KKQ.DAEG
  540-  604 (103.98/60.85)	QQ.......K.KARDNFKQMLE.E...C........RELTSSSRWSKVVTLFEED...ERFKAIERD...KDR....KDI.....FES.....FIVEL...............EKK.ERER
  608-  671 (88.96/51.00)	ER.......K.KNMREYRQFLE.S...C........DFIKASSQWRKLQDRLEAD...ERCSRLEK....MDR....LEI.....FQD.....YLHDL...............EKE.EEEQ
  675-  753 (61.87/33.24)	QKeemrkaeR.KNRDEFRKLME.EhvaA........GTLTAKTLWRDYYMMVKDL...PAYMAVASNtagSTP....KDL.....FED.....VAEEL...............QKQyEEDK
  755-  811 (41.28/19.75)	QV.......D.DA.........vK...I........RKISLTSTWT........V...EGLKASIAD...DIRgtpiSDInfklvFDD.....LLERA...............RKK.E.ER
  815-  894 (80.67/45.57)	KR.......K.RLGDKFFDLLT.T...I........REITPSSTWDECKQLVENS...HEYSSIGDD...IYC....QDI.....FEE.....YITKLkdhetrkhkeekaerEKK.KRGK
  900-  962 (43.45/21.17)	KD.......R.REKDRYDREEE.E...SrdngadsdREILSETRASYKKKKSGEDrerKRHRHIHRT...SDC....MDI.....AE..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.75|      28|      38|     243|     270|       3
---------------------------------------------------------------------------
  243-  270 (56.37/32.61)	GRKYYYNKKTKQSTWQKPFELMTVTERA
  284-  311 (54.38/31.23)	GRTYYYNKATKQSKWEMPAELKLAREEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.32|      15|      18|       7|      24|       4
---------------------------------------------------------------------------
    7-   24 (26.28/19.58)	FSGFQPLQPPVvgsADPP
   27-   41 (33.04/16.84)	FTQPAPVQPWP...ALPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00295 with Med35 domain of Kingdom Viridiplantae
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