<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00294

Description Uncharacterized protein
SequenceMANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSHGTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLRPHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGVPSGDQVNLPSESQNTTPVTVLPVTSEQPAVSAALALESSGQHNSSEVVQRIQTDWIEHTSPAGRKYYYNKKTKQSTWQKPFELMTVTERADASTDWKEFTSSDGRTYYYNKATKQSKWEMPAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPLNASGDTESAVVAESEEISVPVPTSTLVAVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTPMIDSKKSTIQDVPWSAGVSVQDKEAKNIEVSAEGAETLVEEKLTNSEPSPYATKLEAKAAFNALLENANIGSDWTWERAMRIIINDKRYGALKTLGERKEAFNEFVGQRKKQDAEGRRFQQKKARDNFKQMLEECRELTSSSRWSKVVTLFEEDERFKAIERDKDRKDIFESFIVELEKKERERSLEERKKNMREYRQFLESCDFIKASSQWRKLQDRLEADERCSRLEKMDRLEIFQDYLHDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLMEEHVAAGTLTAKTLWRDYYMMVKDLPAYMAVASNTAGSTPKDLFEDVAEELQKQYEEDKSQVDDAVKIRKISLTSTWTVEGLKASIADDIRGTPISDINFKLVFDDLLERARKKEERVVKKRKRLGDKFFDLLTTIREITPSSTWDECKQLVENSHEYSSIGDDIYCQDIFEEYITKLKDHETRKHKEEKAEREKKKRGKEGKRGKDRREKDRYDREEEESRDNGADSDREILSETRASYKKKKSGEDRERKRHRHIHRTSDCMDIAEAEHSEKYHRHNGDHKKATQHESTPESDSESRHRRHKRDRRNGSHRSGGYEEELEDGEFGEDVKK
Length1026
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-1.023
Instability index59.63
Isoelectric point5.87
Molecular weight116662.30
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00294
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     535.83|      65|      65|     540|     604|       1
---------------------------------------------------------------------------
  416-  468 (38.17/16.60)	..............DGTTPMID.S...K........KSTIQDVPWSAGVSV...................QD...KEA....KNI.....EVSaegaeTLVEE...............KLT.NSEP
  472-  536 (74.43/38.82)	AT.......KlEAKAAFNALLE.N...A.........NIGSDWTWERAMRIII.....ND...KRYGALKTL...GER....KEA.....FNE.....FVGQR...............KKQ.DAEG
  540-  604 (104.52/57.26)	QQ.......K.KARDNFKQMLE.E...C........RELTSSSRWSKVVTLFE.....ED...ERFKAIERD...KDR....KDI.....FES.....FIVEL...............EKK.ERER
  608-  671 (89.40/48.00)	ER.......K.KNMREYRQFLE.S...C........DFIKASSQWRKLQDRLE.....AD...ERCSRLEK....MDR....LEI.....FQD.....YLHDL...............EKE.EEEQ
  675-  753 (62.67/31.61)	QKeemrkaeR.KNRDEFRKLME.EhvaA........GTLTAKTLWRDYYMMVK.....DL...PAYMAVASNtagSTP....KDL.....FED.....VAEEL...............QKQyEEDK
  755-  811 (41.01/18.35)	QV.......D.DA.........vK...I........RKISLTSTWT.............V...EGLKASIAD...DIRgtpiSDInfklvFDD.....LLERA...............RKK.E.ER
  815-  894 (80.33/42.44)	KR.......K.RLGDKFFDLLT.T...I........REITPSSTWDECKQLVE.....NS...HEYSSIGDD...IYC....QDI.....FEE.....YITKLkdhetrkhkeekaerEKK.KRGK
  900-  968 (45.31/20.98)	KD.......R.REKDRYDREEE.E...SrdngadsdREILSETRAS.....YKkkksgEDrerKRHRHIHRT...SDC....MDI.....AEA.........................EHS.EK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.36|      37|      38|     227|     263|       2
---------------------------------------------------------------------------
  227-  263 (75.78/45.65)	VVQRIQ..TDWIEHTSPAGRKYYYNKKTKQSTWQKPFEL
  266-  304 (69.59/41.34)	VTERADasTDWKEFTSSDGRTYYYNKATKQSKWEMPAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.77|      19|      19|      87|     105|       3
---------------------------------------------------------------------------
   13-   35 (19.95/ 6.93)	LQ...PPvvgsadPPrNFTQP.............APVQP
   78-   92 (25.43/11.01)	....FPP......PV.QHLAP.............RPGQP
   93-  124 (30.68/14.92)	VQNVLPP......PP.PGPLPisqqnkpmaseslRPHQP
  157-  175 (29.71/14.20)	QGNFVSP......RP.PSLYH.............QMSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.45|      26|      29|     352|     377|       4
---------------------------------------------------------------------------
  326-  351 (38.10/21.41)	SSSTS.....LVPVNEP.DGADISSSTSQGPT
  352-  377 (41.88/24.26)	SSPVP.....AAPLNAS.GDTESAVVAESEEI
  378-  409 (31.47/16.40)	SVPVPtstlvAVVLDTSmDDAEQTVVQQSNEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.32|      13|      27|     971|     983|       5
---------------------------------------------------------------------------
  971-  983 (25.46/20.28)	RH.....NGDHKKATQHE
  996- 1013 (19.86/13.81)	RHkrdrrNGSHRSGGYEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00294 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVVLDTSMDDAEQTVVQQSNEVAADAIDDGTTPMIDSKKST
2) EMPAELKLAREEAKRKLAPGTQSESLPSSSTSLVPVNEPDGADISSSTSQGPTSSPVPAAPLNASGDTESAVVAESEEI
3) HETRKHKEEKAEREKKKRGKEGKRGKDRREKDRYDREEEESRDNGADSDREILSETRASYKKKKSGEDRERKRHRHIHRTSDCMDIAEAEHSEKYHRHNGDHKKATQHESTPESDSESRHRRHKRDRRNGSHRSGGYEEELEDGEFGEDVKK
4) MANDTQFSGFQPLQPPVVGSADPPRNFTQPAPVQPWPALPPQQPQQFVSTVPQHFQTPSHGTVLMNIGLPSAPLHPQFPPPVQHLAPRPGQPVQNVLPPPPPGPLPISQQNKPMASESLRPHQPSGLVSNNFMPAGSGLRAPLSSSYTFASHGGQQQGNFVSPRPPSLYHQMSQPQASGVPSGDQVNLPSESQNTTPVTVLPVTSEQ
388
299
875
1
428
377
1026
207










Molecular Recognition Features






MoRF SequenceStartStop




1) AGRKYYYNKK
242
251