<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00293

Description Uncharacterized protein
SequenceMQTRRREGGDDRLPRVNWSDHASAHDDFSNQSKFLSSNFLYSLPNQRPPVQESMGSRSMVFSMVNPQRLPTNQIDKAWHALSSLRISSRTYITPGKTLPVKDDNAGHSNKVSRTVSSSGKEHGHSWESNKKLNKSTARIDASNNYVSNPVVLAHYEAAEGGCPARQSGNGILGANKAHSEGFAAAMNRDSMPNAQTKSSGGVLADELDDDDILESIDVDQIVMEHYQSTSTPQPSIQKLPPITPDVERNSLQQDESCLPEELRSNCSHGLKLGLCPDAARHLQEMKDNLIAISNELLDNVTELTPEAVEKLRHDRSHLNRQIQQLENHLRSLTVDEERRKSHFSASAAPPTSSLYETPRAFGSRVEPFRLEAHVHPQNEPGGYDRWNSPSVSFTSDRFPVSSGPVDRDSCIQKPVEVNYTEGSIDKKWSSWSFPWTKSLEDHNKKVFGNHSFRPNQREIINATMSRYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQANIPATYLSANMDWSEQQEILRELNSDYCKFKLLYVTPEKVAKSDVLLRQLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPSTPVLALTATATASVKEDVVRALALVNCIIFRQSFNRPNLRYSVIPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYSYSDYIRVKHMISQGAVEQSPFSNGYNRINMANSGRVLETNTDNLLRMVSYCENDVDCRRLLQLVHFGEKFDSNNCGKTCDNCLKIKSFVEKDVTEIAKQLVELVKLAGQQFSSAHLLEVYRGSLNQFVKKHRHEKLNLHGAGKHLAKGEASRVLRHLVTEDFLVEDVRKSDLYGSLSSILKVNESKAYNLCSGRQSVILRFPSVAKISKSSKSDVTPAKGLSTFGKLMPQIDGPAQTEAQGDLILSAKLYTSLRMLRTILVKEAGDGVMAYHIFGNATLQHISKRIPRTKEELLEINGIGKAKVSKYGDRLLETIETTIREYQGTDNRNSSSSNDSMDSMKRRREANGGTKPNYEEDDDFTRSTGRSKKRATVIEAQNYNNQAVNEPGDDITCIDDLDFEDYDFDVDVDASNVNSGGRVLPSWSKS
Length1202
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy-0.564
Instability index48.44
Isoelectric point6.90
Molecular weight134799.15
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00293
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.19|      20|      26|    1096|    1120|       1
---------------------------------------------------------------------------
 1099- 1118 (34.39/22.56)	QGTDNRNSSSSNDSMDSMKR
 1123- 1142 (35.79/10.47)	NGGTKPNYEEDDDFTRSTGR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.28|      20|      26|      66|      90|       2
---------------------------------------------------------------------------
   66-   90 (25.39/34.04)	P.QRLPTNQiDKAWHalsSLRIsSRT
   94-  114 (32.89/21.21)	PgKTLPVKD.DNAGH...SNKV.SRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     352.11|     154|     394|     529|     694|       3
---------------------------------------------------------------------------
  435-  652 (198.00/184.79)	WTKS.LEDHNKKVFGNHsFrpNQREIInATMSRYDvfvlmptgggksltyqlpaliCPGVTLVISPL..........................................................................................................................................................................................................vsliqdqimhllqanipatylsanmdwsEQQEILRELNSDycKFkLLyvtpEKVAKSDV......LLRQLESlHARELLA..RIVIDEAHCVSQWGHDFRPDY...QGLGILKQKFPSTPV.........LALTATATASVKedVVRALaLV....NCIIFRQSFNRPNLRY..SVIP
  653-  694 (21.14/ 9.81)	KTKKcLEDIDKFIKENH.F..DECGII.YCLSRMD.....................CEKVAEKLQEY............................................................................................................................................................................................................................................................................................................................................................................................
  925- 1063 (132.97/94.37)	...................................................................ghkaafyhgsmdpaqrafvqkqwskdeiniicatvafgmginkpdvrfvihhslpksiegyhqecgragrdgqhsscvlyysysdyirvkhmisqgaveqspfsngynrinmansgrvletntdnllrmvsycendvdcrrllqlvhfgekfdsnncgktcdnclkiksfvekdvteiakqlvelvklagqqfssahllevyrgslnqfvkkhrheklnlhgagkhlakgEASRVLRHLVTE..DF.LV....EDVRKSDLygslssILKVNES.KAYNLCSgrQSVILRFPSVAKISKSSKSDVtpaKGLSTFGKLMPQIDGpaqteaqgdLILSAKLYTSLR..MLRTI.LVkeagDGVMAYHIFGNATLQHisKRIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.76|      29|      29|     335|     363|       4
---------------------------------------------------------------------------
  335-  363 (49.52/28.60)	DEERRKSHFSASAAPPTSSLYETPR.AFGS
  366-  395 (50.24/29.13)	EPFRLEAHVHPQNEPGGYDRWNSPSvSFTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.75|      16|      28|     274|     289|       5
---------------------------------------------------------------------------
  242-  258 (23.74/13.41)	ITPDVERNsLQQDESCL
  274-  289 (28.37/17.48)	LCPDAARH.LQEMKDNL
  303-  318 (26.64/15.96)	LTPEAVEK.LRHDRSHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.96|      12|      19|     780|     792|       7
---------------------------------------------------------------------------
  780-  792 (17.68/15.82)	YIRVkHMISQGAV
  801-  812 (22.28/14.46)	YNRI.NMANSGRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.22|      15|      19|      31|      45|       9
---------------------------------------------------------------------------
   31-   45 (25.92/15.67)	QSKFLSSNFLYSLPN
   51-   65 (26.30/16.01)	QESMGSRSMVFSMVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.68|      15|     963|     205|     219|      11
---------------------------------------------------------------------------
  205-  219 (26.28/16.69)	DELDDDDILESIDVD
 1171- 1185 (28.40/18.64)	DDLDFEDYDFDVDVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.07|      21|     188|     696|     727|      12
---------------------------------------------------------------------------
  699-  719 (39.59/44.56)	AFYHGSMDPAQRAFVQKQWSK
  730-  750 (38.48/14.77)	AFGMGINKPDVRFVIHHSLPK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00293 with Med34 domain of Kingdom Viridiplantae
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