<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00290

Description Uncharacterized protein
SequenceMALESRSSNLRLHHHLHRHRHRHQVGSPTWYRRRNLNFRRSGSGPMAASVHRGILDMTRVAQEKGSDPLRWAMQMGSSLNSAGASLPSTELAHELVSHICWDNNVPIAWKFLEKALVVGIVPPLLVIALLSTRVIPCRQSRPAPYRLYMELLKRHAFNLKSHIDGSNHQKVMESIDAAMQLSKIFGLPESEAGILVVEFIFSIVWQLLDASLDDEGLLELTPEANSRWSIKSQEMDIDSFGSFDEKSTESHGILQNANTTMAIEIIGQFLQDKVTSRILYLARQNLPVHWESFIQRLQLLVTGSAALRNSKSLTPEALQLLTSEACVVFSRECKTSSHQKFHAIMAFGSRASSAHCSDLWLPLDVALEDAMDGYDVNPTSAIEIITGLTKSLQAINGTTWHDTFLGLWIAALRLVQRERNPIEGPMPHLDTRLSMLCSIIPLVIADLIEDESPASDDKECAGNDHWKEKKCPGDRCNDLVSSLRILGDYQGLLTPPHSVVSAANQAAAKAMLFLSGINVGSAYFECTSVKDMPLNCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGHISPMPHSIPAQLPSWSTFMKGAPLTPALIGALVSSPASSLAELKKVYEIALKGCDEEKISAATILCGASLLRGWNIQEHTVFFITRLLSPPVPADYEGDGSHLIKYAPMLNVLIVGIGSVDCVQIFSLHGLVPQLACSLMPICEVFGSFVPNCPWALPTGEEISAHAVFSNAFALLLKLWRFNRPPLEHGVGDVPTVRSQLTPEYLLLVRNSHLVPTGNMHKDRIKSRLSEVASSSSPKPVFMDAFPKLKIWYRQHQACIASTLSGLVGTPVCEIADELLTMIFRKLKEGSQSLTTVNSVSSSSSGPRNEDTSIRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVTRSFWKPVFMNGTDWPSPAANLANVEGHIRRILATTGVDIPRIAAGGSSSATLPLPLAAFVSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKARRWSDFLVFSASRTVFLQNTDAVVQLLKSCFTATLGLNTTSMTSNGGVGGLLGHGFGSHFYGGITPVAPGILYLRVYRSIRDIMFVTGEIISILMQSVREIACSGLSSERLEKLKGNTKIRKRYGQVSLTAAMTQMKLASSLAASLVWSSGRHCLVQSLIKETLPSWFISGHRSGKEEGSDGVVAMLGGYALAYFTVLCGTFAWGVDSASSASKRRPKILGTHMEFLASALDGKISLGCDWTTWRAYVSGFVSLMVACTPNWVLEVDVDVLQRLSRGLRQWNEEELALALLGVGGIGTMGAAAELIIRNEL
Length1360
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy0.094
Instability index46.06
Isoelectric point7.56
Molecular weight148498.72
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00290
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     322.47|     126|     161|     951|    1093|       1
---------------------------------------------------------------------------
  951-  989 (31.40/ 6.39)	............................................................................................................................................FMNGTDWPSPAANLANVEGHIRRILATTG.......VDIPRIAAGG
  990- 1154 (179.55/124.37)	SSSATLPlplaafvSLTITYKIDK........ASERFLNLAGpaleSLAAGCPWP....CMpiVASLWTQKARRWsdFLvfSASRTVFLQNTDAVVQLLKS.........CFTATLGLNTTSMTSnggvggllghgfgshFYGGITPVAPGILYLRVYRSIRDIMFVTGeiisilmQSVREIACSG
 1155- 1262 (111.52/54.69)	LSSERLE.......KLKGNTKIRKrygqvsltAAMTQMKLAS....SLAASLVWSsgrhCL..VQSLIKETLPSW..FI..SGHRSGKEEGSDGVVAMLGGyalayftvlCGTFAWGVDSASSAS.............................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     236.01|      63|     161|      48|     113|       2
---------------------------------------------------------------------------
   48-  113 (107.99/72.43)	ASV.HRGILDMTrvaQEKGS......DPLRWAMQ.MGSSLNSAGA.SLPSTELAHELVSHICWDNNVPIAWKFLE
  165-  209 (45.56/22.48)	..................GSnhqkvmESIDAAMQ.L.....SKIF.GLPESEAGILVVEFI.....FSIVWQLLD
  210-  271 (82.47/48.31)	ASLdDEGLLELT...PEANS.........RWSIKsQEMDIDSFGSfDEKSTE.SHGILQNANTTMAIEIIGQFLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.44|      43|     162|     492|     537|       3
---------------------------------------------------------------------------
  492-  537 (70.76/43.02)	LLTPPhsvVSAANQAAAKAML....FLSGINVGSAYFECTSVKDM....P.LNCS
  655-  706 (61.67/30.95)	LLSPP...VPADYEGDGSHLIkyapMLNVLIVGIGSVDCVQIFSLhglvPqLACS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.48|      29|     473|     390|     455|       6
---------------------------------------------------------------------------
  425-  455 (48.88/88.12)	PMPH.LDTRLSMLCSII......PLVIADLIedESPAS
  571-  606 (45.61/12.69)	PMPHsIPAQLPSWSTFMkgapltPALIGALV..SSPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      18|     103|     625|     642|      10
---------------------------------------------------------------------------
  625-  642 (32.69/21.83)	EKISAATILCG..ASLLRGW
  729-  748 (26.86/16.46)	EEISAHAVFSNafALLLKLW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00290 with Med33 domain of Kingdom Viridiplantae
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