<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00289

Description Uncharacterized protein
SequenceMAAAAAVQGQRQREELWGALLEMTRTAQEKNSDPIQWAIRLSSSLGSAGVPLPSLDLAHLLVSHICWDNHVPTAWKFLDKALAVGIVPPMLVLAVLSTRVIPSRHTYPTAYRLYMELLKRHAFSFGALVNGPDYQKVMKSIDNVLNLSQIFGLDACEPGILVMEFVFSLVWQLLDASLDDEGLIEMTPEKKSRWATKPLDMDIDGQDTFSGKETERQEMLHKANTSMAIDVIVAFLQNTVTARILFLARRNMPPHWVGFIQRLRLLAANSVVLRSLKHITPEALLQLTSDSRNVLTREGKTVSQQEFHAVIASGSLISSAGQCHGASQSALWLTIDLFLEDAMDGSQVTATSAVESLTVLAKALRSANNTTWHDTFLGLWISALRLVQRERDSNEGPVPRVDTCLCMLLSVTTLAIASIIEEEESTVEQTDVVVSYQRKERHSQGKRRKDLISSLQQLGDYEGLITPPQSVCSVANQAAAKAMMYISGLTAGNGFYECISMNEMAMNCSGNMRHLIVEACIARNLLDTSAYLWSGYVNTRSSQIPRNIPSQTPGWSSLMKGSPLTPSLTSTLVSVPASSLAEIEKIYEIALNGSDEEKISAATILCGASLVRGWNIQEHIVVLITRLLSPPVPPDYSGPESHLIGYAAFLNVLLLGISSVDCVQIFSLHGLVPQLAAALMPICEIFGSTAPNVSWAGMSGEELSSHAVFSNAFTLLLRLWRFDHPPLEHVMGDVPPVGTHLCPEFLLLVRNSQLACSGNSTNNRFSSESLSGTLVPSPAEPLFMDSFPKLKRWYRQHQKCITSTLSGLGQGTNVHQIVDALLSMMFRKIVRGGPVAPTTSGSSNSSGSAAAEELAIRLKVPAWDILEATPFVLDAALAACAHKRVSPREMATGLKDLADYLPASLATIVSYFSAEVTRGIWKPVIMNGSDWPSPAANLSTVEQQIKNNIAAIGVDVPSLAVGGSAPATLPLPLAALVSFTITYKLDKASERLLMFIGPALNSLAAGCPWPCMPIIASLWAQKVKRWSDFLIFRASQTVFHHNSDAVVHLLKSCFSSTLGLSSSQISSNGGVGALLGQGLGSLFSGGISPVAPGILYLRVHRYVRDVMFMSEVILSLLMHFVREIANSGLPRERAEKLRKTKYGMRYGQVSLAAAMTRVKVAASLGASFVWISGGVSLVQSLIKETLPSWFISGHKSEQEGGDMGGMVAMLRGYALAYFALLCGAFAWGTDSASPVSRRRPKVLGAHLEFLASALDGKISLGCDSATWHAYVSGFVGLMVTCAPKWVLEVDVDVLKRLSNGLRHWNEEELAVALLGQGGINAVGSAAELIIEIGC
Length1334
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.07
Grand average of hydropathy0.174
Instability index46.38
Isoelectric point6.63
Molecular weight144408.13
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
phenylpropanoid metabolic process	GO:0009698	IEA:EnsemblPlants
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     827.77|     190|     471|     669|     858|       1
---------------------------------------------------------------------------
  567-  655 (62.95/29.63)	........................................................................................................................SLTSTL..VSVPAS...SLAeIEKI.YEIALN.....GSDEE...............KISAATiLCGasLVRG.WNIQEH....IVVL..ITRLL.....SP......PVPPDYSGpESHLIGYAAFLNVLL.L
  669-  858 (326.76/188.57)	HGLVPQLAAALMPICEIFGSTAPNVSWAG..MSGEELSSHAVFSNAFTLLLRLWR......FDHPPLEHVMGDVP...PVGTHL....CPEFLL...LVRNSQ..LACSGNSTNNRFSSESLSGTL..VPSPAE...PLF.MDSF.PKLKRW.....YRQHQ...............KCITST.LSG..LGQG.TNVHQI....VDAL..LSMMFRKIVRGG......PVAPTTSG.SSNSSGSAAAEELAIRL
  895- 1099 (212.21/119.55)	KDLADYLPASLATIVSYFSAEVTRGIWKPviMNGSDWPSPA..ANLSTVEQQIKNniaaigVDVPSLA.VGGSAPatlPLPLAA....LVSFTItykLDKASErlLMFIGPALN......SLAAG...CPWPCM...PII.ASLWaQKVKRWsdfliFRASQtvfhhnsdavvhllkSCFSST.L.G..LSSSqISSNGG....VGAL..LGQGLGSLFSGG....isPVAP...G.I...........LYLRV
 1146- 1332 (225.85/127.77)	YGQV.SLAAAMTRV.KVAASLGASFVW....ISG....GVSLVQSLIKETLPSWF......ISGHKSEQEGGDMG...GMVAMLrgyaLAYFAL...LCGAFA..WGTDSASPVSRRRPKVLGAHLefLASALDgkiSLG.CDS.....ATW.....H....................AYVSG.FVG..LMVT.CAPKWVlevdVDVLkrLSNGLRH.....wneeelAVALLGQG.GINAVGSAA..ELIIEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00289 with Med33 domain of Kingdom Viridiplantae
Unable to open file!