<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00278

Description Uncharacterized protein
SequenceMAAMEGAIPPNQSQQQTQQQQQQQQQPPPPPVAAERLNAAVQQQLRLESVKGRATTLFKAVSRILEDFDAYARTNATPKWQDILGQYAMVNLELFKIVEEIRTVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMETDDNSKREQLLQGMQNLPVASQIEKLKARIDMIAAACESAEKVLSDTRKAYGFGARQGPTIAPTLDKAQAAKIQEQENILRAAVNFGEGLRTSGDQRQMPPALPMHLSDVLHVGDGMQNLADASASFSGIYQKSSSASSNNMSGTGALLQGTGTQLLGRSAASPGASSFDNSSASPMPYANSPRSGTNMNTPSPQQQSQQQQPQQQQQQQQRQKMMQLPQHQQILLAQQQFRQPTMSALGQGQPQMQYTQTLGHQQFQGRQLPSGPLQHSIGQGQLNQGNMISRHLNQFSGSANSALFNAAQTAPNNQMIPNISTMQSQSLLPRMQFGLSGTNPQRSHASQMLNDQIYNMGAANATNMIPVQQQQQQQQQQQQQPPGSQGAFGNMAPNAQGLQSGMVTLPNASQNHPNFSQQRQQNQQ
Length554
PositionHead
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.04
Grand average of hydropathy-0.723
Instability index63.36
Isoelectric point9.47
Molecular weight60473.97
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00278
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     245.67|      42|      46|     331|     372|       1
---------------------------------------------------------------------------
  331-  372 (75.33/20.14)	QQQS.....QQQQPQQQQ....QQQQRQKMMQLPQHQ.QI...LLAQQQFRQPTM
  377-  417 (58.93/14.18)	QGQP.....QMQYTQTLG....HQQFQGR..QLPSGPlQH...SIGQGQLNQGNM
  428-  476 (44.97/ 9.11)	SANSalfnaAQTAPNNQMipniSTMQSQSL..LPRMQ.FG...LSGTNPQRSHAS
  488-  532 (66.44/16.91)	AANA.....TNMIPVQQQ....QQQQQQQQQQPPGSQ.GAfgnMAPNAQGLQSGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.94|      17|      18|       9|      26|       2
---------------------------------------------------------------------------
   10-   26 (32.41/13.61)	PNQSQQQTQ..QQQQQQQQ
  536-  554 (28.52/ 6.59)	PNASQNHPNfsQQRQQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.41|      18|      18|     297|     314|       3
---------------------------------------------------------------------------
  268-  285 (26.25/11.94)	QKSSSASSNNMSGTGALL
  297-  314 (31.94/16.04)	AASPGASSFDNSSASPMP
  316-  330 (26.22/11.92)	ANSPRSGTNMN...TPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.82|      15|      18|      40|      56|       4
---------------------------------------------------------------------------
   40-   56 (19.70/25.79)	AVQQQLrlESVKGRATT
   60-   74 (25.12/22.33)	AVSRIL..EDFDAYART
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.20|      16|      34|     170|     190|       5
---------------------------------------------------------------------------
  184-  214 (16.77/15.58)	RKAYGFGarqgptiaptldkaqAAKIQEQEN
  217-  232 (25.43/ 6.77)	RAAVNFG...............EGLRTSGDQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.61|      10|     101|     148|     157|       6
---------------------------------------------------------------------------
  148-  157 (20.13/10.57)	QGMQNLPVAS
  251-  260 (19.48/ 9.99)	DGMQNLADAS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00278 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAAMEGAIPPNQSQQQTQQQQQQQQQPPPPPVAAERLN
2) SASFSGIYQKSSSASSNNMSGTGALLQGTGTQLLGRSAASPGASSFDNSSASPMPYANSPRSGTNMNTPSPQQQSQQQQPQQQQQQQQRQKMMQLPQHQQILLAQQQFRQPTMSALGQGQPQMQYTQTLGHQQFQGRQLPSGPLQHSIGQGQLNQGNMISRHLNQFSGSANSALFNAAQTAPNNQMIPNISTMQSQSLLPRMQFGLSGTNPQRSHASQMLNDQIYNMGAANATNMIPVQQQQQQQQQQQQQPPGSQGAFGNMAPNAQGLQSGMVTLPNASQNHPNFSQQRQQNQQ
1
260
38
554










Molecular Recognition Features






MoRF SequenceStartStop




NANANA