<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00273

Description Uncharacterized protein
SequenceMFRPSSIFRIISKRGKYVLPYSLRKNLCTCCRRALRGKATSRNFPEPATSSFPTSGISHSTLSRSSASETLSLSLSFLSIRGSTSIEAADPSSMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFADASVQSDIKHWPFKVTPGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSQGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIKDEKISAKLSEGDKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGADMGAGGMDEDGPSAGGSGAGPKIEEVD
Length742
PositionUnknown
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.414
Instability index36.40
Isoelectric point5.80
Molecular weight81245.12
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00273
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.46|      22|      26|     126|     150|       1
---------------------------------------------------------------------------
  106-  125 (23.40/ 7.19)	DLG....TTYSCVGVWQHDRveII......
  128-  149 (41.13/23.91)	DQGNR..TTPSYVAFTDTER..LIG....D
  151-  176 (18.93/12.46)	.AKNQvaMNPINTVF.DAKR..LIGrrfaD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.18|      25|      41|     604|     628|       2
---------------------------------------------------------------------------
  604-  628 (40.77/23.78)	NDKGRLSKEEIEKMVQEAEKYKSED
  647-  671 (40.42/23.52)	NMRNTIKDEKISAKLSEGDKKKIED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     391.13|      96|     189|     214|     309|       3
---------------------------------------------------------------------------
  214-  309 (151.28/106.11)	EEISSMVLTKMREIAEAYL......GSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAA.AIAYGLDKKATSV.GEKNVLIFDLGGGTFDVSLL
  402-  498 (132.73/92.13)	EELNMDLFRKCMEPVEKCLrdakmdKSTIHDVVLVGGSTRIPKVQQLLQD..FFNGKELCKSIN.PD.E.AVAYGAAVQAAILsGEGNEKVQDL..LLLDVTPL
  516-  595 (107.12/72.81)	...NTTIPTKKEQVFSTY........SDNQPGVL.IQVY..EGERARTRDNNLLGKFELSGIPPAPRGVpQITVCFDIDAN...GILNVSAEDKTTG.......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00273 with Med37 domain of Kingdom Viridiplantae
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