<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00271

Description Uncharacterized protein
SequenceMMDNNNWRPTPPAGVGGGGAEAALDGGDWRGQLPPESRDRIVNKIMETLKRHLPVSGPEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIPNALPSNPAGNSSKDPVMQSQIQNQGQSIPNSLAVNQPQARQQLLVQNIQNNVPSGVQASASLSSTLPSVSGLNQSSIPNTIGQNNNMQNMPSVSQNSLGNSLGQGLNSNMFVNSRQLQARQQMVSQQQQQQSQNSQQYIYQQQQYQQQLLKQKLQPVVPHSLMSSQFQQQQQQQQQQNMLQPTQLQASQQSVLQTSSVMQPSMQPAPLAGLQQNQQSSVPQSTQSMLQQHQGLRQQQSQQAVHQQQASLSQQPMLTPQQQQQHQLSSQQMMQQNQLAGQQNNMGDMQQQQQQRLLNPQNNLQNIQQQQQQQQQQQQQQLMPQQNNLTNIHPQQMAPQSNVPGLNQQQQMVGSQSGNSSMQVGQHQVHVLQQSKVPVQQQIQGGASNLLASQGQQSQAQPMQQQLMSQIQQQPAQLQQQVGLQQQANLLQRDMHQRLQASGSLVQQQNVIDQQKQLYPSQRPLSETSTMSIDSSAQTGHSAGGDWQEEAYQKMKSMRDAYLSELNEMYQKISMRLQQHESLPQQPKSDQLDKLKNFKLMLERVIAILQVNKSEINPSFKEKLVHYEKQIINIINTSRPRKVAMQQGQLPPPHMHSMQQQQQQQQSQPQITQVQSHDNQMNPQLQSMNLQGSVASMQQNNMGNLHHNSMSSLSGVSNAQQTMISSLQPNSNMDSGQNNALNTMQQVGMGPMQQNPVSAPQQVNMSTMPQQGGVNMLQSNVNTHQSNSNMLQHQHIKQQQEQQILQTQQQFKQQYQQRQMQQQMKQQLLHQQQQQQQHQHQLQQAKQQLPSQLQTHQIPQLHQMNDGSDIKIRPGMGVKQGVFQQHHSATQRSSFPHQQLKSGASFPTSSPQLLQAASPQIPQNSSPQIDQQNAHSLTKAGTPLQSSNSPFVVPSPATPLAPSPMPGESEKPISGISSLSNAGNIGNQQPSAAPAPAPSLAIGTPGISASPLLAEFGPDGAHGNASAVVSSKSTVTEQPFERLIKAVKSMSPQALNSAVNDIGSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFMTQDGTSGNRKMRRHTSAMPLNVVSSAGSVNDSFKQFTGAESSDLESTATSSIKRPRIEANHVLLEEIREINQRLIDTVVDISDEDVNPSATVAVAEGGEGVIVKCSFNAVALSPNLRSQYASAQMVGFVPYTVRLYHERDAMLLTFYVLFL
Length1296
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.03
Grand average of hydropathy-0.797
Instability index74.39
Isoelectric point9.40
Molecular weight143198.45
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00271
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     213.40|      41|      43|     356|     396|       1
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  226-  261 (46.44/ 7.40)	QQ.MVSQQQQQQSQNSQQYIYQQ..Q........QY.QQQ.LLKQKLQP...
  356-  394 (75.99/18.08)	QQPMLTPQQQQQHQLSSQQMMQQ..N........QLAGQQ.NNMGDMQQQ..
  415-  453 (47.58/ 7.82)	QQ.....QQQQQQQL....MPQQ..NnltnihpqQMAPQS.NVPG.LNQQQQ
  868-  911 (43.39/ 6.31)	QQLLHQQQQQQQHQHQLQQAKQQlpS........QLQTHQiPQLHQMNDGSD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     190.34|      36|      37|     990|    1025|       2
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  960-  989 (28.87/ 9.46)	...............SPQIPQNSSPqIDQQNAHSLTKAGTPL.QSS
  990- 1025 (63.28/29.67)	N....SPF....VVPSPATPLAPSP.MPGESEKPISGISSLS.NAG
 1026- 1059 (39.07/15.45)	NignqQPS....AAPAPAPSLAIGT..PGISASPL.....LA.EFG
 1066- 1097 (35.73/13.49)	N....ASA....VVSSKST.VTEQP.F....ERLIKAVKSMSpQAL
 1098- 1128 (23.38/ 6.24)	N....SAVndigSVVSMVDRIAGS..APGNGSRAAVG.........
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     416.17|      78|      98|     465|     542|       6
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  312-  350 (54.10/ 7.64)	PLAGL.QQN........................................QQSSV....PQSTQSM..............LQQ.......................................HQ.GLR...Q...........................................QQSQQ..AVHQQ................
  351-  488 (50.81/ 6.66)	....QASLSqqpmltpqqqqqhqlssqqmmqqnqlagqqnnmgdmqqqqQQRLL....NP..QNNLQNI....QQQQQ....qqqqqqqqqlmpqqnnltnihpqqmapqsnvpglnqqqqMV.GSQ...SG...........NSSM.............QVG...QHQVH.VLQQSKV..PVQQQI............QGG
  489-  582 (111.02/24.60)	ASNLLASQG........................................QQSQA....QPMQQQLMSQI....QQQPAQLQQ.......................................QV.GLQ...QQA..NLLQRDMHQRLQ.............ASGslvQQQ.N.VIDQQKQlyPSQRPLsetstmsidssaQTG
  583-  673 (58.64/ 8.99)	HS...AGGD........................................WQEEAyqkmKSMRDAYLSELnemyQKISMRLQQ.......................................HE.SLP...QQP.....KSDQLDKLKnfklmlerviailQVN...KSEINpSFKEKLV..HYEKQI...............
  674-  735 (61.46/ 9.84)	.INIINTSR..................................prkvamQQGQL....PPPHMHSMQQ.....QQQQQQSQP.......................................QItQVQ...SHD..N....QMNPQLQ.........smnlQ.......................................GS
  772-  846 (80.14/15.40)	NSNM..DSG........................................QNNAL....NTMQQVGMGPM....QQNPVSAPQ.......................................QV.NMStmpQQGgvNMLQSNVNTH.Q........snsnmL.....QHQ.H.IKQQQE......QQI...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.24|      15|      21|      64|      82|       7
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   64-   82 (19.44/26.47)	LKKIAVrfeeKIYTAAT.SQ
   86-  101 (21.80/15.24)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.34|      16|      21|     119|     134|       8
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  119-  134 (29.27/12.42)	DPVMQSQ..IQNQGQSIP
  141-  158 (24.07/ 8.48)	QPQARQQllVQNIQNNVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.51|      11|      21|       2|      12|       9
---------------------------------------------------------------------------
    2-   12 (24.77/14.21)	MDNNNWRPTPP
   24-   34 (22.74/12.42)	LDGGDWRGQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.52|      17|     638|     294|     310|      13
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  294-  310 (30.98/13.57)	QQSVLQT.SSVMQPSMQP
  921-  938 (25.54/ 9.77)	KQGVFQQhHSATQRSSFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.93|      21|      21|    1153|    1173|      15
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 1153- 1173 (35.86/20.99)	NRKMRRHTSAMPLNVVSSAGS
 1175- 1195 (33.07/18.78)	NDSFKQFTGAESSDLESTATS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00271 with Med15 domain of Kingdom Viridiplantae
Unable to open file!