<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00269

Description Uncharacterized protein
SequenceMMDNNNWRPTPPAGVGGGGAEAALDGGDWRGQLPPESRDRIVNKIMETLKRHLPVSGPEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIPNALPSNPAGNSSKDPVMQSQIQNQGQSIPNSLAVNQPQARQQLLVQNIQNNVPSGVQASASLSSTLPSVSGLNQSSIPNTIGQNNNMQNMPSVSQNSLGNSLGQGLNSNMFVNSRQLQARQQMVSQQQQQQSQNSQQYIYQQQQYQQQLLKQKLQPVVPHSLMSSQFQQQQQQQQQQNMLQPTQLQASQQSVLQTSSVMQPSMQPAPLAGLQQNQQSSVPQSTQSMLQQHQGLRQQQSQQAVHQQQASLSQQPMLTPQQQQQHQLSSQQMMQQNQLAGQQNNMGDMQQQQQQRLLNPQNNLQNIQQQQQQQQQQQQQQLMPQQNNLTNIHPQQMAPQSNVPGLNQQQQMVGSQSGNSSMQVGQHQVHVLQQSKVPVQQQIQGGASNLLASQGQQSQAQPMQQQLMSQIQQQPAQLQQQVGLQQQANLLQRDMHQRLQASGSLVQQQNVIDQQKQLYPSQRPLSETSTMSIDSSAQTGHSAGGDWQEEAYQKMKSMRDAYLSELNEMYQKISMRLQQHESLPQQPKSDQLDKLKNFKLMLERVIAILQVNKSEINPSFKEKLVHYEKQIINIINTSRPRKVAMQQGQLPPPHMHSMQQQQQQQQSQPQITQVQSHDNQMNPQLQSMNLQGSVASMQQNNMGNLHHNSMSSLSGVSNAQQTMISSLQPNSNMDSGQNNALNTMQQVGMGPMQQNPVSAPQQVNMSTMPQQGGVNMLQSNVNTHQSNSNMLQHQHIKQQQEQQILQTQQQFKQQYQQRQMQQQMKQQLLHQQQQQQQHQHQLQQAKQQLPSQLQTHQIPQLHQMNDGSDIKIRPGMGVKQGVFQQHHSATQRSSFPHQQLKSGASFPTSSPQLLQAASPQIPQNSSPQIDQQNAHSLTKAGTPLQSSNSPFVVPSPATPLAPSPMPGESEKPISGISSLSNAGNIGNQQPSAAPAPAPSLAIGTPGISASPLLAEFGPDGAHGNASAVVSSKSTVTEQPFERLIKAVKSMSPQALNSAVNDIGSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFMTQDGTSGNRKMRRHTSAMPLNVVSSAGSVNDSFKQFTGAESSDLESTATSSIKRPRIEANHVLLEEIREINQRLIDTVVDISDEDVNPSATVAVAEGGEGVIVKCSFNAVALSPNLRSQYASAQMSPIQPLRLLVPTNYPNCSPVLLDKFPVEVSKEYEDLSVKAKSRFSISLRSLSQPMSLRDIARTWDDCARAVILEYAQQRGGGSFSSKYGTWENCLSAA
Length1368
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.03
Grand average of hydropathy-0.791
Instability index74.11
Isoelectric point9.35
Molecular weight150990.09
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00269
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     256.73|      41|      43|     356|     396|       1
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  226-  261 (46.43/ 7.66)	QQ.MVSQQQQQQSQNS.......QQYIYQQ..Q........QY.QQQ.LLKQKLQP...
  281-  321 (42.24/ 6.11)	QQNMLQPTQLQASQQSvlqtssvMQPSMQP..A........PLAG........LQQNQQ
  356-  394 (76.51/18.83)	QQPMLTPQQQQQHQLS.......SQQMMQQ..N........QLAGQQ.NNMGDMQQQ..
  415-  453 (47.81/ 8.18)	QQ.....QQQQQQQL...........MPQQ..NnltnihpqQMAPQS.NVPG.LNQQQQ
  868-  911 (43.74/ 6.67)	QQLLHQQQQQQQHQHQ.......LQQAKQQlpS........QLQTHQiPQLHQMNDGSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     265.40|      55|      61|     948|    1003|       3
---------------------------------------------------------------------------
  125-  171 (40.05/ 6.53)	QiqnQGQ..............SIPNSLA..vnQPQARQQLLVQN....IQNNVP......SGV..QASASLSST...L......
  498-  563 (62.92/15.41)	Q...QSQAQPmqqqlmsqiqqQPA.QLQ.qqvGLQQQANLLQRDMHQ.RLQASG......SLVQQQNVIDQQKQ...LYP...S
  948-  989 (53.53/13.80)	................................FPTSSPQLLQAASPQ.IPQNSS......PQIDQQNAHSLTKA...GTPlQSS
  990- 1029 (55.81/12.69)	N...SPFVVP...........SPATPL...............APSP..MPGESE......KPI..SGISSLSNA...GN..IGN
 1030- 1097 (53.10/11.66)	Q...QPSAAP...........APAPSLAigtpGISASP.LLAEFGPDgAHGNASavvsskSTVTEQPFERLIKAvksMSP.QAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.51|      17|      21|     783|     803|       4
---------------------------------------------------------------------------
  715-  731 (25.78/ 6.39)	QVQSHDNQMNP....Q...LQSMN
  788-  811 (20.74/10.76)	QVGMGPMQQNPvsapQqvnMSTMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.09|      17|      21|     172|     192|       5
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  173-  192 (28.80/15.24)	SVSglnQSSIPNTIGQ..NNNM
  197-  215 (29.28/ 8.05)	SVS...QNSLGNSLGQglNSNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     141.67|      35|      38|     567|     601|       6
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  327-  353 (38.16/ 9.73)	.........STQSMLQQHQGLRQQQSQQAVHQ.QQAS
  567-  601 (54.17/17.50)	LSETSTM..SIDSSAQTGHSAGGDWQEEAYQKMKSMR
  605-  641 (49.33/15.15)	LSELNEMyqKISMRLQQHESLPQQPKSDQLDKLKNFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.77|      16|      16|    1271|    1286|       8
---------------------------------------------------------------------------
 1271- 1286 (29.02/18.59)	SPI..QPLRLLVPTNYPN
 1288- 1305 (22.75/12.90)	SPVllDKFPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.45|      21|      25|     817|     841|       9
---------------------------------------------------------------------------
  817-  841 (28.89/12.59)	NMLQsnvnTHQSNSNMLQHQHIKQQ
  845-  865 (38.56/11.09)	QILQ....TQQQFKQQYQQRQMQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.92|      16|      16|     658|     673|      10
---------------------------------------------------------------------------
  658-  673 (27.57/17.66)	INPSFKEKLVHYEKQI
  677-  692 (27.35/17.45)	INTSRPRKVAMQQGQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.51|      11|      21|       2|      12|      13
---------------------------------------------------------------------------
    2-   12 (24.77/16.30)	MDNNNWRPTPP
   24-   34 (22.74/14.26)	LDGGDWRGQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.35|      21|      71|    1174|    1195|      15
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 1153- 1173 (35.95/30.03)	NRKMRRHTSAMPLNVVSSAGS
 1175- 1195 (34.40/22.23)	NDSFKQFTGAESSDLESTATS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.98|      14|     131|     267|     280|      18
---------------------------------------------------------------------------
  267-  280 (27.83/11.55)	LMSSQ..FQQQQQQQQ
  399-  414 (21.15/ 6.11)	LLNPQnnLQNIQQQQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00269 with Med15 domain of Kingdom Viridiplantae
Unable to open file!