<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00265

Description Uncharacterized protein
SequenceMQQQLTAQVASPPNPASTLTPAPAPGPTPPPVNEPRAEAPPKQVALAMDRLSQAARLIADVRLGADRILEALFVAAQPHQSTKPHRSFTKEDASMRQHLQDLRAIGKLLEESGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLNGQSLESEPKRHCGSRVSTASQEDAHSNYKTLSDVLIHMEKEMPSVKVLTHGRLDWLKRASSLPSSANENLIEASKEHSFHGLNRLRPSPVGTVSVNTDKVAVIELLVPSVFRALISLHPAGSVDPDAVAFFSPDEGGSYVHARGHSVHHVFRHITCFSFQDHAAMALQYFVGVKAETALLSLLRWISSYQTLFTKVCSECGRLLSMDKRSALLLPPVHRPYMDTPVSSTKDQSANLSRAYHLACYPEQT
Length432
PositionTail
OrganismEucalyptus grandis (Flooded gum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Myrtales> Myrtaceae> Myrtoideae> Eucalypteae> Eucalyptus.
Aromaticity0.06
Grand average of hydropathy-0.303
Instability index58.63
Isoelectric point8.96
Molecular weight47377.37
Publications
PubMed=24919147

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00265
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.58|      12|      15|      43|      54|       1
---------------------------------------------------------------------------
   43-   54 (19.84/13.01)	QVALAMDRLSQA
   60-   71 (19.74/12.91)	DVRLGADRILEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.43|      28|      29|     254|     281|       2
---------------------------------------------------------------------------
  233-  252 (20.15/ 8.55)	.........HGrLDWLKRASSLPSSANEN
  254-  281 (48.91/31.68)	IEASKEHSFHG.LNRLRPSPVGTVSVNTD
  286-  309 (40.36/24.80)	IELLVPSVFRA.LISLHPA..G..SVDPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.21|      36|     251|      73|     109|       3
---------------------------------------------------------------------------
   73-  109 (59.22/45.65)	FVAAQPHQSTKPHR.....SFtKEDASMR.QHLQDLRAIGKLL
  322-  363 (53.99/36.41)	YVHARGHSVHHVFRhitcfSF.QDHAAMAlQYFVGVKAETALL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00265 with Med27 domain of Kingdom Viridiplantae
Unable to open file!