<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00229

Description Mediator of RNA polymerase II transcription subunit
SequenceMRRITMNIPPIQQPGAMGVGQMGQPVNTQLSQNQQQAQQTQQVQQQQQQQQQQQQQQQQMQEKLDNISKVKSLVGPLRESLATALKTAAQTLHQNSLVDVGSLKGIDQSDHRFNKNMEEFYSICDQIELHLKTSMECLSQNSSSVRYLPMSVITTRTDTVSTQEGPALSYPQFLMTVRAQVQFAGEIHKNLSSTAYPQQIAANSNDPRGISDTQS
Length215
PositionTail
OrganismOoceraea biroi (Clonal raider ant) (Cerapachys biroi)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Dorylinae> Ooceraea.
Aromaticity0.04
Grand average of hydropathy-0.737
Instability index57.32
Isoelectric point6.90
Molecular weight24044.65
Publications
PubMed=24508170

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00229
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.62|      15|      15|      32|      46|       1
---------------------------------------------------------------------------
   32-   46 (28.41/ 9.60)	QNQQQAQQTQQVQQQ
   49-   63 (28.21/ 9.49)	QQQQQQQQQQQMQEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.69|      12|      15|     107|     118|       2
---------------------------------------------------------------------------
  107-  118 (22.34/15.25)	DQSDHRFNKNME
  125-  136 (20.35/13.39)	DQIELHLKTSME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.59|      18|      21|     140|     158|       3
---------------------------------------------------------------------------
  140-  158 (26.58/24.79)	QNSSSVRYlPMSVITTRTD
  163-  180 (32.01/24.31)	QEGPALSY.PQFLMTVRAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00229 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRRITMNIPPIQQPGAMGVGQMGQPVNTQLSQNQQQAQQTQQVQQQQQQQQQQQQQQQQMQEKLD
1
65










Molecular Recognition Features






MoRF SequenceStartStop




1) MRRITMNIPPI
1
11