<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00207

Description Mediator of RNA polymerase II transcription subunit
SequenceMVTGPAEHVCGIQADVIFVIEGTAVNGAYLNDLKTNYLVPTLEYFSQGGIEDREYVSENSTTLYGIVVYHAADCLPAPCTETLGPYSNPHKLLMVLDKLEMVGGKGESFANIGEGLATGLQCFEDLQLRREPNTASQKHCILICNSPPYQTMIQESYKFAGHTIEQIATIYQERNINISILSPRKIPALYKLFEKAGGDLQSSQTKNYAKDPRHLVLLRNYNLKERPVSPQIGGNVHTAAVTAAQIPLSPLQSNDSPNTNQVQQNMAPPESAAGSQAPQNIANVHQTVTPSMAAPMNAARPPYNPQIAAPPNYHPAGVNIAARPTRWMRPFIAPSATAPANAQGSALIAQLTQPPSSLGLNVAAFNQRLDAGNNVMAPNPQQQQQQLTQQQQQLRLTMQLQQQQQQQNAQQATMSMAAQPTHNQSGSQLTVSCISQSVPTQVPQTVTVSQQAPVSVSSITQQITHPQAQNNVATGTVQGQQLMPRERQNIWQGIVEWIEKAKNPTDAQKQTRHVPCQVSANSKDGDPELKADTWPPKLIMQLMPKQLIGNIGGSYLKNSKSVLFHPTPCEALESLTKMMSAGFAGCVHFTSAASSPACEIKVLILLYTAEKKTYLGFIPNDQTAFVDRLRKVIQQQKTSQASMRQGQVNANPGPGNAIPAPMPTTGAQGGILMSQTNTMTMGGGQITQNVVSTNAPPQTLTSSSGPQAQMNMQNSGISGPQANAAAGEAAQQQEAQYKSQLEVNAGCVHFTSAASSPACEIKVLILLYTAEKKTYLGFIPNDQTAFVDRLRKVIQQQKTSQASMRQGQVNANPGPGNAIPAPMPTTGAQGGILMSQTNTMTMGGGQITQNVVSTNAPPQTLTSSSGPQAQMNMQMLIDLMRLQNSGISGPQANAAAGGMIGQQRPPFDDIEMARHQNLLKIQHLRQTLEAAQQQEAQYKSQLEVNAQQAQRGLNQAAMANQQANAQRLMRPVTTNNLGLRHLLQQPQPQYRQVFGVQQQMVGPRGQIATRPMAPGNAQNQQFEDVPNYDFLN
Length1032
PositionUnknown
OrganismOoceraea biroi (Clonal raider ant) (Cerapachys biroi)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Formicoidea> Formicidae> Dorylinae> Ooceraea.
Aromaticity0.05
Grand average of hydropathy-0.444
Instability index52.39
Isoelectric point8.83
Molecular weight111493.93
Publications
PubMed=24508170

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00207
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     233.36|      26|      27|     647|     672|       1
---------------------------------------------------------------------------
  252-  272 (28.26/ 7.69)	QSNDSP.NTNQVQQNM....APPESA
  647-  672 (48.25/18.95)	QVNANPGPGNAIPAPMPTTGAQGGIL
  675-  700 (45.49/17.40)	QTNTMTMGGGQITQNVVSTNAPPQTL
  808-  833 (48.25/18.95)	QVNANPGPGNAIPAPMPTTGAQGGIL
  836-  882 (35.45/11.74)	QTNTMTMGGGQITQNVVSTNAPPQTL
  943-  968 (27.67/ 7.36)	EVNAQQAQRGLNQAAMANQQANAQRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     263.55|      63|     159|     584|     646|       2
---------------------------------------------------------------------------
  584-  646 (131.78/96.86)	AGCVHFTSAASSPACEIKVLILLYTAEKKTYLGFIPNDQTAFVDRLRKVIQQQKTSQASMRQG
  745-  807 (131.78/96.86)	AGCVHFTSAASSPACEIKVLILLYTAEKKTYLGFIPNDQTAFVDRLRKVIQQQKTSQASMRQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.42|      13|     159|     701|     713|       3
---------------------------------------------------------------------------
  701-  713 (28.71/14.13)	TSSSGPQAQMNMQ
  862-  874 (28.71/14.13)	TSSSGPQAQMNMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     169.87|      24|     168|     714|     737|       4
---------------------------------------------------------------------------
  304-  327 (33.29/11.60)	NPQI.AAPPNYHPAGVNIAARP........TRW
  366-  390 (29.36/ 9.23)	NQRLdAGNNVMAPNPQQQQQQL........TQQ
  714-  737 (43.67/17.85)	NSGI.SGPQANAAAGEAAQQQE........AQY
  884-  915 (32.86/11.34)	NSGI.SGPQANAAAGGMIGQQRppfddiemARH
  916-  938 (30.70/10.04)	QNLL.K.IQHLRQTLEAAQQQE........AQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      13|      15|     442|     454|       6
---------------------------------------------------------------------------
  442-  454 (22.45/11.05)	VPQTVTVSQ.QAPV
  459-  472 (19.54/ 8.57)	ITQQITHPQaQNNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.63|      24|      97|     400|     426|       9
---------------------------------------------------------------------------
  401-  424 (44.27/22.63)	QQQQQQQNAQQATMSMAAQPTHNQ
  997- 1020 (45.36/14.28)	QQQMVGPRGQIATRPMAPGNAQNQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00207 with Med25 domain of Kingdom Metazoa
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