<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00197

Description Uncharacterized protein
SequenceMAAPTPSGGWREEITEENRKGMITDMYHELLRISGENDKQKVWRSAAKFELMLWLQSTDQMTYMSKLQKKIASLKKKVQSETAGVPQQTPAQQQQQQQQQAQMNSQAQAQMAAAAGMFQNPVNMANAAGMANATNAAAIQQYNQTLFLQQQAELLKKQQEQHRLNTLARQQQAQQAVAAAQAAAAAQATQAAQVAAQAAAAAAATTANTSASAPGPTTTNPLATQQQPQVLMQLQQQYQQQKSALTTAQHNEMQRLRQAQLLQQNQVSTQQHQNNVPQEARVNQMTQLQQQHLNARNKLSAEHKAKQAQLLRQHQQTFLQQKALLGHTTMSAAAANNANASASSGTAANNSATMNANAMNTAAAMQQAAAIAAQTNNQVTAAQALAAQKFQQQQRALSRQNSLTSTTPGPTASTASTPPVPAANAAGQLATAASGDALSYGDKLKQLKTKYWEDLVVVCREFTRMAMQKPAGESQQALQQQERIKNFLQNLKRIMTLLNQDPTKLTSNNRNDLDRVEQHIERQVMPILSRLKSDKAKQREVRGKQDAFAEGDSMSIGPG
Length559
PositionTail
OrganismAphanomyces invadans
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Saprolegniales> Saprolegniaceae> Aphanomyces.
Aromaticity0.03
Grand average of hydropathy-0.712
Instability index50.05
Isoelectric point9.99
Molecular weight60885.63
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00197
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     460.67|      84|      84|      68|     151|       1
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    1-  107 (91.14/23.76)	...MAAptPSGGWREEITEENR.KG.MitdmyhellrisgendkQKVWRSAA..KFELML.W.LQSTdqmtymsklQKKIASLKKKVQ.........SETAGVPQQTPAQQQQQQ.QQQAQMNSQA
  108-  194 (114.27/31.79)	QAQMAA..AAGMFQNPVNMANA.AG.M.................ANATNAAAIQQYNQTL.F.LQQQaellkkqqeQHRLNTLARQQQ.........A......QQAVAAAQAAA.AAQATQAAQV
  195-  278 (104.05/28.25)	AAQAAA..AAA..ATTANTSAS.AP.G.................PTTTNPLATQQQPQVL.MqLQQQ........yQQQKSALTTAQH.........NEMQRLRQAQLLQQNQVS.TQQHQNNVPQ
  279-  358 (77.96/19.19)	EARVNQ..MTQLQQQHLNARNKlSA.E.................HKAKQAQLLRQHQQT..F.LQQK......................allghttmSAAAANNANASASSGTAA.NNSATMNANA
  408-  488 (73.25/17.55)	PGPTAS..TAS..TPPVPAANA.AGqL.................ATAASGDALS.YGDKLkQ.LKTK.....................ywedlvvvcREFTRMAMQKPAGESQQAlQQQERIKNFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00197 with Med15 domain of Kingdom Oomycetes
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