<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00181

Description Uncharacterized protein (Fragment)
SequenceVIPHRHSCPAAFRLYMELLKRHAFSLKECTNLPNYHKTMNSIDKVLDLSQIFGLQENEASAQLVLFVFSTVWRLVDAALDDEGLLQLTENEPKWPVRPQDMEIDNVYEEKRKEYSEILQNVNTIMAVELIGQFLQNKVTSKILYLARQNMCTHWESLIQRMQLLLEHSSALRNSKCISPEILLKLISDTHKIKVHPVVQATPLVNSAGLCIGTSQSALWLPLDMLLEDAMDGSQVNATSAIEIITGLVKSLQAIHITSWHAIFLGLWMAALRLVQRERDPIEGPVPRLDTRLSMLLSITTLVVADLVEEEESVAVDEFEYCLEIKHRISGKRRMDLIFSLQNLHEYQSLLTPPQSVISAANQAASKAMMFISGITVGTAYFDSISTMDMPIDCSGTLHHLIVESCIARNLLDSSAYLWPGYVNGHINQLPHNVPTEVPGWSSFLKGASLTPVMINALVSTPASSFAEIEKVFEIACKGSNDERIAGATILCGASLIRGWNIQEHTVYFITRLLSPPVPADYSENESHLISYAPMLNVLLVGIAPVDCVQIFSLHGLVPELAGSLMTICEVFGSCVPNISWTLTTGEEISAHAVFSNAFALLLKLWKFNHPPVEYGVGDVPPVGSQLTPEYLLLVRNSHLISSGNSLKDPNRRRLARVACSSSSKPIFVDSFPKLKVWYRQHLACIASPLTGLVNGTPVHHTVDALLNMMFRKINRGNQSVANVTSGSSNSSRLGSEEGYLRPKLPAWDILEAVPFVADAALTACAHGRLSPRELCTGLKDLADYLPATLATIVSYFSAEVTRGVWKSVFMNGTDWPSPAANLSSVEEQIKKILAATGVDVPSLAAGVSSPAALPLPLAAFVSLTITYKLDKASQRFLDLAGPALETLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHSNDAVVQLLRSCFSATLGLNTSCCISSNGGIGALLGHGFGSHFNGGISPVAPGILYLRVYRSIRDVMFLREEIVSLLMQTVEDIVCLKPKKSKYGHASFAAALTEVKVAASLGASVVFLTGGLGLVQSLFKETLPSWFMSIHRSEKEGNRGGILPMLRGYALAYLAALCGAFIWGIDSSLSAASKRRPKILGCHMEFLASALDGKISVGCDPATWHAYVSGFLSLMVRCTPTWILELNVELLTRLCKGLRQWNENELALALLGVGGHGTMGSAAEMIIETEF
Length1207
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.08
Grand average of hydropathy0.206
Instability index46.94
Isoelectric point6.35
Molecular weight131959.46
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.54|      25|      27|     800|     824|       1
---------------------------------------------------------------------------
  800-  824 (47.87/31.02)	VTRGVWKSVFMNGTDWPSPAANLSS
  825-  849 (40.68/25.20)	VEEQIKKILAATGVDVPSLAAGVSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.97|      23|      27|     526|     552|       2
---------------------------------------------------------------------------
  530-  552 (40.71/35.22)	SYAPMLNVLLVGIAPV..DCVQIFS
  555-  579 (35.31/18.32)	GLVPELAGSLMTICEVfgSCVPNIS
  882-  898 (24.94/12.43)	...PALETLAAG.CPW..PCMPI..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.42|      20|      27|     639|     658|       3
---------------------------------------------------------------------------
  639-  658 (33.37/22.18)	LISSGNSLKDPNRRRLARVA
  667-  686 (38.06/26.40)	FVDSFPKLKVWYRQHLACIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.48|      26|      30|      28|      57|       4
---------------------------------------------------------------------------
   32-   57 (44.66/32.16)	LPNYHKTMNSIDKVLDLSQIFGLQEN
   65-   90 (42.82/20.61)	LFVFSTVWRLVDAALDDEGLLQLTEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.88|      16|     541|     191|     221|       5
---------------------------------------------------------------------------
  171-  186 (27.67/26.54)	LRNSK..CI.SPEILLKLI
  203-  221 (20.22/13.01)	LVNSAglCIgTSQSALWLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.14|      61|     541|     393|     459|       6
---------------------------------------------------------------------------
  393-  459 (95.84/67.73)	C.SGTLhHLIVESCIARNlLDSSAYLWPGYvNGHINqlpHNVPTEVPGWSSFLKGASLTPVMI..NALVS
  937- 1000 (99.30/52.05)	CfSATL.GLNTSCCISSN.GGIGALLGHGF.GSHFN...GGISPVAPGILYLRVYRSIRDVMFlrEEIVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00181 with Med33 domain of Kingdom Viridiplantae
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