<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00178

Description Uncharacterized protein
SequenceMDPDYKKFGRGPRELTGAVDLISHYKLLPHHDFFCKKPLPLSISDTHYLHNVVGDTEIRKGEGMQLSQLIQDKPLSRETSTRIQPFDLDILREAFQLRETAPVDLPPSEKGTPTIAGKSKSESKDKEKKHKKHKDKDRDKDKEHKKHKHRHKDRSKDKDKEKKKDKSGHHESGNDHSKRHHEKKRKHDGDEEGNDIHKHKKSKHKSSKIDEMGGIKVAG
Length219
PositionHead
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.04
Grand average of hydropathy-1.580
Instability index37.86
Isoelectric point9.57
Molecular weight25331.27
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00178
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.87|      15|      15|     125|     139|       1
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  125-  139 (28.08/ 9.35)	DKEKKHKKHKDKDRD
  141-  155 (28.45/ 9.57)	DKEHKKHKHRHKDRS
  157-  171 (23.75/ 6.74)	DKDKEKKKDKSGHHE
  175-  189 (24.58/ 7.24)	DHSKRHHEKKRKHDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00178 with Med19 domain of Kingdom Viridiplantae
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