<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00177

Description Uncharacterized protein
SequenceMANNPQSTGMQVINPATNTFKSFFLLQFRPLAPPPPPPSFIPMGPQQFQPIGHSIQYPQAPPPLQPPPLQRHVLPQGTPNSFMPAFAGPGIPHISFSSGGQTQNNVVSTAQHLPMSQTDAPPNFSAPWFSSGTHNTQSGLPMQPALGVFSQNINPVTPLQQNSEQNTTGKNTLLDLAEPASSYWREHTSRGGKKYYYNKKTRVSTWDKPFELMTPIEVGHSLYLAYDFFLLYMFYFNNATKTSKWAIPDEVQLARDRVNANPSEGTSTDVVNSYAVSSTPEVNNLSSLVQENVIVPSPVSVTPAVEPDLPEASGASSTHEFANLKSDSTGLQSPLEITTTPMRISDASPHEAAVVKISTENVDVIMWLIFYFFALSDGDLAEDNRSAEVSGSGDSNLPEEQKLDDGPLVYETKEEAKNAFKALLEASNVGSDWSWDQAMRLIIKDRRYGALRTLGERKQTFNECVGQKKKQEAEERRARQKKAKEDFKTMLQECKDLTYTTRWSKAISMFEKDERFQAIDRVKDREDLFDDHLEELKQKERAKALEEKKLHKAEYLEFLKSCDFVRASSQWRRVQDRLEDDERCLRLEKIDRLEIFQEYIRDLEKEEEELRKLRMEEQRKAERKNRDEFRKLMEEHVATGALTANTHWREYCMKVKDAPAYLAVCSNTTGSTAKDLFQDVVDDLEKQYSEDREHIEAAMKAEKIFLSSSWTIEDFKGALSKELKSKSVSDINLKLVFDDLIKTEKEKEEKEAKKLKRLTEDVYKFLFVSKDISPSSKWEDFKSLVEKRFTAEESFFLEIFNKVINELKEKAKEKERRRKEQNAKDKERRDKEMRKDRRNRDRGPESRKGKERRKSDDTESDRSGSHGLEENRRSKDRRNKHQKRSFDTSSLDDDEKDRARSRRRSVESKRSKQVCNIMSTIFV
Length923
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.08
Grand average of hydropathy-0.897
Instability index56.07
Isoelectric point6.82
Molecular weight106159.96
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00177
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     482.25|      65|      65|     490|     554|       1
---------------------------------------------------------------------------
  423-  486 (78.90/36.96)	LL.E...ASNVGSDWSWDQAMRLII....KD.RRYGAL...RTLGERK....QTFNECVGQK.KKQEAEERRARQKKA.....KED
  490-  554 (100.34/48.79)	MLQE...CKDLTYTTRWSKAISMFE....KD.ERFQAI...DRVKDRE....DLFDDHLEEL.KQKERAKALEEKKLH.....KAE
  558-  622 (78.32/36.64)	FLKS...CDFVRASSQWRRVQDRLE....DD.ERCLRL...EKI.DRL....EIFQEYIRDLeKEEEELRKLRMEEQR.....KAE
  632-  702 (58.17/25.53)	LMEEhvaTGALTANTHW.REYCMKV....KDaPAYLAVcsnTTGSTAK....DLFQDVVDDL......EKQYSEDREHieaamKAE
  705-  762 (55.23/23.91)	FL...........SSSWT..IEDFKgalsKE.LKSKSV...SDI.NLK....LVFDDLIKTE.KEKEEKEAKKLKRLT.....EDV
  765-  824 (67.04/30.42)	FLFV...SKDISPSSKWEDFKSLVE....K...RFTA.........EEsfflEIFNKVINEL.KEKAKEKE.RRRKEQ.....NAK
  856-  910 (44.24/17.85)	.........DDTESDR.SGSHGLEEnrrsKD.RRNKHQ...KRSFDTS....SLDDD..EKD.RARSRRRSVESKR..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.60|      21|      32|      30|      59|       2
---------------------------------------------------------------------------
   30-   50 (47.12/17.77)	PLAPPPPPPSFIPMG.PQQFQP
   63-   84 (37.48/24.64)	PLQPPPLQRHVLPQGtPNSFMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.04|      20|      33|     280|     310|       3
---------------------------------------------------------------------------
  280-  302 (28.76/34.67)	PEVNNLSSlvqENVIVPSPVSVT
  319-  338 (34.28/13.71)	HEFANLKS...DSTGLQSPLEIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.90|      25|      32|      87|     117|       4
---------------------------------------------------------------------------
   87-  117 (40.09/39.91)	AGPGIPHISFSSGgqTQNnvvsTAQHLPM.......SQ
  120-  151 (45.81/28.17)	APPNFSAPWFSSG..THN....TQSGLPMqpalgvfSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00177 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KAKEKERRRKEQNAKDKERRDKEMRKDRRNRDRGPESRKGKERRKSDDTESDRSGSHGLEENRRSKDRRNKHQKRSFDTSSLDDDEKDRARSRRRSVESKRSKQVCNIMSTIFV
2) PPPPPSFIPMGPQQFQPIGHSIQYPQAPPPLQPPPLQRHVLPQGTPNSFMPAFAGPGIPHISFSSGGQTQNNVVSTAQHLPMSQTDAPPNFSAPWFSSGTHNTQ
810
34
923
137










Molecular Recognition Features






MoRF SequenceStartStop




NANANA