<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00172

Description Uncharacterized protein
SequenceMASNQPPSGSQPHWQHPQSGPMAPQNYAPSYPMQFRPAGQAPQGQSFIPQQATQQFHTAGQAQNHGMPLGQSQPNPFSQQMQQFLPRPGQPVPSSFPQSNMQPTSGMPQPQAASSHGAPYSSSYTYAPSSFGLPQSGISASPQFQPSQMSMPGGPPTGAPQWFHSGQSTPGVAPLQQPNQPPFPASATVPAVSGSSAVQQNASDWQEYEAADGRRYYYNKITKQSSWEKPSELLTPLERADASTVWKEFTTSEGRKYYYNKETKQSKWTIPDELKLARELAEKAASEGPHSEMNTSSTITTSTTGTSVEANPTTTTIAGVTSSPAPIATTSSFGVTSVAETVVPSPYEVPGSSGAPVIIANNNTTPLTSTEIPSSHVRASPLGGASFQDTEEEKKGTTVDGKLNVTPVEEKPMDDEPMVYATKQEAKNAFKALLESANVEADWSWDQAMRVIINDKRYGALKTLGERKQAFNEYLMQRKKVEAEERRLRQRKAKEEFMTMLEESEELTSSMRWSKAVIMFEDDKRFKAVELESDREDLFRNYLVDLHKKEKAKAQEEQRRNKQEFRQFLESCGFIKVDSQWRKVQDLLEDDERCTRLDKLDRLDVFQDYIRDLEKEDDEQKKRQKEQLRRTERKNRDAFREMMEEHIATGTLTAKTYWRDYCQKVKDSEPYAAVALNTSGSTPKDLFEDVAEELVKKYDEDKARIKDALKHEKVTIASTTTFDDFKSSIEESIGSPSISDINLQDLIDRAKDKEEKEAKKLKRLAKDFTDKLSTIKEINVLSTWEECKHLVEDSSEYRSVGDESSCKEIFDEYISRLQEKVKEKERKREEDKAKKETEREEKEKRKDKEKREREKEREKDRDLDREKEKGKDNSRNDEEMEIDDGVESQGHKDEKKREKDKDRKHRRRHKSPTDDVSSDKDDKDDTKKSRSRHGSDRKKSRKHANSPESDGEGRHKRHRRDHRDGSRRIGGHEELEDGEVGEDGEIQ
Length987
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-1.214
Instability index61.78
Isoelectric point5.86
Molecular weight112326.74
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00172
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     191.39|      23|      23|      34|      56|       1
---------------------------------------------------------------------------
    7-   31 (22.49/ 7.37)	...PSGsqphwQH.....P..Q....SGP...M.APQ...NYA..PSY
   34-   56 (44.93/21.47)	QFRPAG.....QA.....P..Q....GQS...F.IPQ...QAT..QQF
   58-   81 (21.12/ 6.51)	...TAG.....QAqnhgmP..L....GQS.....QPN...PFS..QQM
  100-  122 (30.99/12.71)	NMQPTS.....GM.....P..Q....PQA...A.SSH...GAP..YSS
  123-  144 (20.71/ 6.25)	SY...T.....YA.....P........SS...FgLPQsgiSAS..PQF
  152-  181 (28.85/11.37)	PGGPPT.....GA.....P..QwfhsGQStpgV.APL...QQP..NQP
  182-  208 (22.29/ 7.24)	PFPASA.....TV.....PavS....GSS...A.VQQ...NASdwQEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     411.83|      65|      66|     433|     497|       2
---------------------------------------------------------------------------
  433-  495 (88.50/49.88)	........LL.ES.AN.VEADWSWDQAMRVIINDKRYG..ALKTLGE.RKQAFNEYLM...QR..KKVEAEERR.....LR..QR...KAKE
  496-  563 (77.73/42.90)	EF....mtMLeES.EE.LTSSMRWSKAVIMFEDDKRFK..AVELESD.REDLFRNYLVdlhKK..EKAKAQE........E..QR...RNKQ
  564-  637 (77.67/42.86)	EF....rqFL.ES.CGfIKVDSQWRKVQDLLEDDERCT..RLDKL.D.RLDVFQDYIR...DL..EKEDDEQKKrqkeqLRrtER...KNRD
  638-  707 (57.90/30.03)	AFremmeeHI.AT.GT.LTAKTYWRDYCQKVKDSEPYAavALNTSGStPKDLF.EDVA...EElvKKYDEDKAR.....IK..D........
  767-  835 (77.68/42.86)	DF....tdKL.STiKE.INVLSTWEECKHLVEDSSEYR..SVGDESS.CKEIFDEYIS...RL.qEKVKEKERK.....RE..ED...KAKK
  836-  868 (32.35/13.46)	...........ET..................EREEKEK..R................K...DK..EKREREKER.....EK..DRdldREKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.41|      28|      28|     869|     896|       3
---------------------------------------------------------------------------
  869-  890 (30.76/11.94)	........KGKDNSRN...D...EEMEIDDGVES.QG
  891-  921 (34.13/13.99)	HKDEKK..REKDKDRK...HrrrHKSPTDD.VSSdKD
  922-  951 (38.41/16.60)	DKDDTKksRSRHGSDR...K...KSRKHANSPES.DG
  955-  978 (27.10/ 9.71)	HKRHRR..DHRDGSRRiggH...EELE..DG......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.62|      26|      39|     212|     239|       4
---------------------------------------------------------------------------
  212-  239 (48.47/37.33)	DGRRYYYNKITKQSSWEKPSELltPLER
  253-  278 (52.16/33.87)	EGRKYYYNKETKQSKWTIPDEL..KLAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.59|      29|      31|     300|     328|       5
---------------------------------------------------------------------------
  300-  328 (50.28/26.78)	TTSTTG.TSVEAN..PTTTTIAGVTSSPAPIA
  329-  360 (40.31/20.11)	TTSSFGvTSVAETvvPSPYEVPGSSGAPVIIA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00172 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IPDELKLARELAEKAASEGPHSEMNTSSTITTSTTGTSVEANPTTTTIAGVTSSPAPIATTSSFGVTSVAETVVPSPYEVPGSSGAPVIIANNNTTPLTSTEIPSSHVRASPLGGASFQDTEEEKKGTTVDGKLNVTPVEEKPMDDEPMVYAT
2) MASNQPPSGSQPHWQHPQSGPMAPQNYAPSYPMQFRPAGQAPQGQSFIPQQATQQFHTAGQAQNHGMPLGQSQPNPFSQQMQQFLPRPGQPVPSSFPQSNMQPTSGMPQPQAASSHGAPYS
3) PQSGISASPQFQPSQMSMPGGPPTGAPQWFHSGQSTPGVAPLQQPNQPPFPASATVPAVSGSSAVQQNASDWQ
4) VKEKERKREEDKAKKETEREEKEKRKDKEKREREKEREKDRDLDREKEKGKDNSRNDEEMEIDDGVESQGHKDEKKREKDKDRKHRRRHKSPTDDVSSDKDDKDDTKKSRSRHGSDRKKSRKHANSPESDGEGRHKRHRRDHRDGSRRIGGHEELEDGEVGEDGEIQ
270
1
134
821
422
121
206
987










Molecular Recognition Features






MoRF SequenceStartStop




1) DGRRYYYNKIT
2) GRKYYYNK
3) HRRDHR
4) QNYAPSYPMQFRPA
5) RIGGHEELED
212
254
958
25
968
222
261
963
38
977