<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00172

Description Uncharacterized protein
SequenceMASNQPPSGSQPHWQHPQSGPMAPQNYAPSYPMQFRPAGQAPQGQSFIPQQATQQFHTAGQAQNHGMPLGQSQPNPFSQQMQQFLPRPGQPVPSSFPQSNMQPTSGMPQPQAASSHGAPYSSSYTYAPSSFGLPQSGISASPQFQPSQMSMPGGPPTGAPQWFHSGQSTPGVAPLQQPNQPPFPASATVPAVSGSSAVQQNASDWQEYEAADGRRYYYNKITKQSSWEKPSELLTPLERADASTVWKEFTTSEGRKYYYNKETKQSKWTIPDELKLARELAEKAASEGPHSEMNTSSTITTSTTGTSVEANPTTTTIAGVTSSPAPIATTSSFGVTSVAETVVPSPYEVPGSSGAPVIIANNNTTPLTSTEIPSSHVRASPLGGASFQDTEEEKKGTTVDGKLNVTPVEEKPMDDEPMVYATKQEAKNAFKALLESANVEADWSWDQAMRVIINDKRYGALKTLGERKQAFNEYLMQRKKVEAEERRLRQRKAKEEFMTMLEESEELTSSMRWSKAVIMFEDDKRFKAVELESDREDLFRNYLVDLHKKEKAKAQEEQRRNKQEFRQFLESCGFIKVDSQWRKVQDLLEDDERCTRLDKLDRLDVFQDYIRDLEKEDDEQKKRQKEQLRRTERKNRDAFREMMEEHIATGTLTAKTYWRDYCQKVKDSEPYAAVALNTSGSTPKDLFEDVAEELVKKYDEDKARIKDALKHEKVTIASTTTFDDFKSSIEESIGSPSISDINLQDLIDRAKDKEEKEAKKLKRLAKDFTDKLSTIKEINVLSTWEECKHLVEDSSEYRSVGDESSCKEIFDEYISRLQEKVKEKERKREEDKAKKETEREEKEKRKDKEKREREKEREKDRDLDREKEKGKDNSRNDEEMEIDDGVESQGHKDEKKREKDKDRKHRRRHKSPTDDVSSDKDDKDDTKKSRSRHGSDRKKSRKHANSPESDGEGRHKRHRRDHRDGSRRIGGHEELEDGEVGEDGEIQ
Length987
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-1.214
Instability index61.78
Isoelectric point5.86
Molecular weight112326.74
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00172
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     191.39|      23|      23|      34|      56|       1
---------------------------------------------------------------------------
    7-   31 (22.49/ 7.37)	...PSGsqphwQH.....P..Q....SGP...M.APQ...NYA..PSY
   34-   56 (44.93/21.47)	QFRPAG.....QA.....P..Q....GQS...F.IPQ...QAT..QQF
   58-   81 (21.12/ 6.51)	...TAG.....QAqnhgmP..L....GQS.....QPN...PFS..QQM
  100-  122 (30.99/12.71)	NMQPTS.....GM.....P..Q....PQA...A.SSH...GAP..YSS
  123-  144 (20.71/ 6.25)	SY...T.....YA.....P........SS...FgLPQsgiSAS..PQF
  152-  181 (28.85/11.37)	PGGPPT.....GA.....P..QwfhsGQStpgV.APL...QQP..NQP
  182-  208 (22.29/ 7.24)	PFPASA.....TV.....PavS....GSS...A.VQQ...NASdwQEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     411.83|      65|      66|     433|     497|       2
---------------------------------------------------------------------------
  433-  495 (88.50/49.88)	........LL.ES.AN.VEADWSWDQAMRVIINDKRYG..ALKTLGE.RKQAFNEYLM...QR..KKVEAEERR.....LR..QR...KAKE
  496-  563 (77.73/42.90)	EF....mtMLeES.EE.LTSSMRWSKAVIMFEDDKRFK..AVELESD.REDLFRNYLVdlhKK..EKAKAQE........E..QR...RNKQ
  564-  637 (77.67/42.86)	EF....rqFL.ES.CGfIKVDSQWRKVQDLLEDDERCT..RLDKL.D.RLDVFQDYIR...DL..EKEDDEQKKrqkeqLRrtER...KNRD
  638-  707 (57.90/30.03)	AFremmeeHI.AT.GT.LTAKTYWRDYCQKVKDSEPYAavALNTSGStPKDLF.EDVA...EElvKKYDEDKAR.....IK..D........
  767-  835 (77.68/42.86)	DF....tdKL.STiKE.INVLSTWEECKHLVEDSSEYR..SVGDESS.CKEIFDEYIS...RL.qEKVKEKERK.....RE..ED...KAKK
  836-  868 (32.35/13.46)	...........ET..................EREEKEK..R................K...DK..EKREREKER.....EK..DRdldREKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.41|      28|      28|     869|     896|       3
---------------------------------------------------------------------------
  869-  890 (30.76/11.94)	........KGKDNSRN...D...EEMEIDDGVES.QG
  891-  921 (34.13/13.99)	HKDEKK..REKDKDRK...HrrrHKSPTDD.VSSdKD
  922-  951 (38.41/16.60)	DKDDTKksRSRHGSDR...K...KSRKHANSPES.DG
  955-  978 (27.10/ 9.71)	HKRHRR..DHRDGSRRiggH...EELE..DG......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.62|      26|      39|     212|     239|       4
---------------------------------------------------------------------------
  212-  239 (48.47/37.33)	DGRRYYYNKITKQSSWEKPSELltPLER
  253-  278 (52.16/33.87)	EGRKYYYNKETKQSKWTIPDEL..KLAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.59|      29|      31|     300|     328|       5
---------------------------------------------------------------------------
  300-  328 (50.28/26.78)	TTSTTG.TSVEAN..PTTTTIAGVTSSPAPIA
  329-  360 (40.31/20.11)	TTSSFGvTSVAETvvPSPYEVPGSSGAPVIIA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00172 with Med35 domain of Kingdom Viridiplantae
Unable to open file!