<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00169

Description Uncharacterized protein
SequenceMQRYHAGNCTSAVNNNSTIGGIRDTSHIDTPAVPSNFSLNPRRPSQITLYKLRCDKEPLNSRLGPPDFHPQTPNCPEETLTREYVQAGYRETVEGLEEAREIPLSQVQAFTRPVIFKCKEAIRKCHRAIIESRTKKRKAGQVYEVPLSGNLLIKSGIFPELRPCGEDFRKKWIEGLSQPHKRLRSLADHVPHGYRRKSLFEVLIRNNVPLLRATWFIKVTYLNQVRAASSNSSSSFNGKTQFSRSEQWTKDVIEYLQYLLDEFMARNISHSTLHMRERSSQIYTGSVQPQGDSFSAAVDGEEPSLYTKWWYVVRIIHWHHAEGLLVPSLIIDWVLNQLQQKESLGVLQLLLPIIYGVIETVVLSQNYVRILVKIAIRFIQEPSPGGSDLVDNSRRAYTTSAIVEMLRYLVLVVPDTFVALDCFPLPVCVVSHVVNDGSFLSKKVEDARKVKGGRIGAGDKNQADSLSFHSVVSSVKKRAETLSTAARPNHSGYNVAKVLQMLDQALVHGDIGGSYKLLFENLWDGACAENWLTKVSPCLHTSLKHIRSVTSSLICSIFFVFEWATCEFRDFRTAPPHGLKFTGRKDLSQILIAIRILKLRVSKMPNMYTSKQRSRNIPDIFESPGPLHDIILCWIDQHEVHNKEGFKRVQLQIRELIVSKFFNPLAYVRQLIISGIMDENGPMVDLEKRKRHYKLLKELPAAYIRDALEEAQIAEPSIILDAINIYSNERKMVLRGLLGNRKSNPSANGSNKRQAHQKSYRSGSCSPSSVERWYFQEASNVSTANLDTDTKLEELKASISALLQFPVPSSSIDSGINESQGNLKRSGGGYSGADVSEETSGCEECKRAKRQKISEERSSLLQSYPADEEEKWWVKKGVKYIENSRVEPPPKPVKQSSSRGRQKSVRKTQSLAQLADARIEGSQGASTSHVCESRIGCPHHRAGYDEISKPVDGTRKPPCADIVLIRKLLKQMQFIKKRTIAVWLISVVKQLIEESEAFTAKVGQYGRQLPPVDDRSSKQWRLGEDELSVILYIMDVCNELVAAIRFLFWLFPKVPSYPPSTLHGRNILTLPKIAENHACEVGEAFLLSCIRRYENIIIASDLIPETLSATMRRTAGVMASSGRLSVSPALVYARHLLRKYGSISSIVEWEKAFYPTCDKRLSSELESAKSLDGDFGFPLGVPNGVGDPDDYFRQKIGGVRIAKQIVMGLLDCMRQTGGAAQEGDPSLVSSAIAAIVHNIGQVFAKIPDLTAGSNHLHASPPYGSLHFTQRILRIHITCLCVLKEALGERQSRVFEVALATEASSALMQAFSASSPNEALNHSNKAVLGRAARISAAVSALVIGAILQGVASLERMVTLFRLKEGLDLVQFARNLKSNVNGNARSVGVLKVDNLIEVSVNWFRVLVGNCRTVSDGLIVDLLGEASIVALFRMQRMLPLNLVFPPAYSIFSFVIWRPVIDGSFGAREDFHHLYQLLGVAANDAIKHLPFREICLRDTYGLYDLIAADNLDSEFVSMLEFNGSDMSLKAAALVPLRSRLFLDALIDCKMPQPVVKLDDKNSVSKQVELKKQCGENVKKLMGKLVHVLNTLQPAKFHWQWVELRLLLNEQSVNEKMENDTSLAEAIRSLSPIPDKSTGSENESNFIQIVLTRLLIRPDAAPLFSEVVHLLGKSLEDSMLSQAKWLLRGAEVLYGKKSIRQKVVNIAAGIKEVCLKPQYWKPWGWCRSDTNRVTDKGDKWKSEGSALEEGEVVDEGAADFNQPGKESGLSDIEGLTVSQQHVTERALVELILPCLDQGPDDLRYNFASEMIKQISNIEQQINAVTRGVGKQGVTPSTVIGSPASKGGSRKSGKSGSPGISRQSTGAADNTVPPSPVALRASMTLRLQFLIRLLPIICLDREPLGRNIRYTLAPVILRLLGSRVVHEDAGHFISPIFTSSKRDVNPLKEASAELLSGENIFDSLLLVLHALLSCYQPSWLKSKSESKPTESSKDYAAFDREVAESLQNELDRMELPETIRWRIQTAMPILLPPVKCSINCQPPSVPPTVLTRLMPITQVTTVNPNHNNSNPSQRSPILPGHIVKNKQHALQLELDSSEIIDQWTLLEEGTGSGGPPLATSAGISGSGQSNLKASNLLKGAIRVRRKDLTYVGAVDEDS
Length2152
PositionKinase
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.228
Instability index48.96
Isoelectric point8.99
Molecular weight239229.78
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00169
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     456.57|     120|     975|      70|     209|       1
---------------------------------------------------------------------------
   70-  195 (199.47/135.52)	PQTPNCPEETLtreyvQAGYRET..VEGLEEAREIPLSQV.QAFTRPVI...FKCKEAIRKCHRAIIE..SRTKKRKAGQVYEVPLSGNLL.....IKS........G.IFPE..LRPCGE.DFRKKWiEGLSQP..HKRLRSLADHVPHGYR
  902- 1021 (128.03/73.61)	................QKSVRKTqsLAQLADAR.IEGSQ..GASTSHVCesrIGCPHH.RAGYDEISK..PVDGTRKP.PCADIVLIRKLLkqmqfIKKrtiavwliS.VVKQ..LIEESE.AFTAK....VGQY..GRQLPPVDDRSSKQWR
 1052- 1163 (129.07/84.95)	PKVPSYPPSTL........HGRN..ILTLPKIAENHACEVgEAFLLSCI...RR.YENIIIASDLIPEtlSATMRRTAGVMAS...SGRLS.....VSP........AlVYARhlLRKYGSiSSIVEW.EKAFYPtcDKRLSS..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.51|      98|     820|    1225|    1333|       7
---------------------------------------------------------------------------
 1225- 1333 (139.86/105.61)	PSLVSSAIAAIVhNIGQVFAKIPDlTAGSNHLHASP..PYGSLHFTQRILRIHITCLCVLKE.ALGERQSRVFEVALATEAssalmqAFSASSPNEaLNHSNkaVLGRAARI
 2037- 2137 (157.65/89.80)	PSVPPTVLTRLM.PITQVTTVNPN.HNNSNPSQRSPilPGHIVKNKQHALQLELDSSEIIDQwTLLEEGTGSGGPPLATSA......GISGSGQSN.LKASN..LLKGAIRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.49|      56|     278|    1618|    1675|       9
---------------------------------------------------------------------------
 1618- 1675 (90.07/53.53)	LAEAIR.SLSPIPDKSTGS....ENESNFIQIVLTRllIRPDAAPLFSEVVHLL.GKSLEDSML
 1898- 1959 (80.43/42.72)	LGRNIRyTLAPVILRLLGSrvvhEDAGHFISPIFTS..SKRDVNPLKEASAELLsGENIFDSLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00169 with Med12 domain of Kingdom Viridiplantae
Unable to open file!