<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00168

Description Uncharacterized protein (Fragment)
SequenceMMQRAPTPGPATQSFSDMEQLNNPPPPQQQRPSSSSSSRAHHFHPARPAILDLFNLYLGSSRQKSDEPVREPPNKAQKRVTAINRELPPPNEQFLFDFERIQSQFPEQEQLRAVTESVLISLVIQCCSHAPRAEFLLFALRSLCSIGCINWDAFLPSLLSSVSSAETPVSQTVAAVASGNSSHSGAPPPSNTVPNSTNFHSSNPASPLPSMQGVGSPAQSAAEPSSTLSPMKSNDANGQQSTRARTSVRENAISSLRQLSCKIILVGLDSNLMPVTLADIFNHMMNWLVNWDQKQQGPDEFDSAKTWRPDNALMEWLHNCLDVVWVLVEDNKCRVPFYELIRSGLQFIENIPDDEALFTLILEIHRRRDMMATHMQMLDQHLHCPTFGTPRLLPQATTNISGETVTNMRYSPITYPSVLGEPLHGEEIASSIQRGSLDWERALRFLRHAFRNTPSPDWWRRVLLLAPLHRLPAQGPTLGAVFTSEMISEATIDRIVELLKLTNSEANCWQEWLVFSDVFFFLMKHGCIDFVDFIGKLVSRLQDNDQHILKTNHVTWLLAQIIRVELVMNALNTNVEATRKILSFHKEDRSTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGERIMDYMNMDERSIGMFWVVSYTMAQPACETVMNWLTSAGATEILPGPNIQSNERLMVMQEVSPLPVSLISGFSINLCLKLAHQMEESIFSGQVLPSIAMVETYVRVLLIAPHSLFRSLMTLLTQRNQNPLSRPAASLLVFEILNYRLLLLYRYQGKHKGLIHDVTKIIATLKGKRGDHRAFRLAENLCLNLILSMREFFYVKRDGKGPTEFTETLNRTTVTNLAIIIKTRGVAEVEHLLYLQTMLEQILATSQHAWSEKTLRYFPSILRDALAGRIDKRGLAIQAWQQ
Length933
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.08
Grand average of hydropathy-0.231
Instability index49.93
Isoelectric point6.83
Molecular weight105659.92
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00168
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.56|      45|      48|     757|     801|       1
---------------------------------------------------------------------------
  757-  801 (75.32/40.94)	HSLFRSLMTLLTQRNQNPLSRPAASLLVFEILNYRLLLLYRYQGK
  807-  851 (76.25/41.52)	HDVTKIIATLKGKRGDHRAFRLAENLCLNLILSMREFFYVKRDGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.68|      11|      20|      37|      47|       4
---------------------------------------------------------------------------
   37-   47 (22.01/13.01)	SSRAHHFHPAR
   60-   70 (19.67/10.87)	SSRQKSDEPVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     227.70|      75|     286|     384|     467|       5
---------------------------------------------------------------------------
  384-  467 (114.74/91.81)	CPTF.......GTPRLLPqaTTNI.SGETVTNMR.YSPItyPSVLgepLHGEEIASSIQRGSlDWERALrFLRHAFRNTPSPDWWRRVLLLAP
  673-  756 (112.96/64.62)	CETVmnwltsaGATEILP..GPNIqSNERLMVMQeVSPL..PVSL...ISGFSINLCLKLAH.QMEESI.FSGQVLPSIAMVETYVRVLLIAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.87|      16|      18|     157|     173|       6
---------------------------------------------------------------------------
  157-  173 (23.15/17.65)	SLLSSVSSAETPvSQTV
  178-  193 (31.72/20.01)	SGNSSHSGAPPP.SNTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00168 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MMQRAPTPGPATQSFSDMEQLNNPPPPQQQRPSSSSSSRAHH
2) SQTVAAVASGNSSHSGAPPPSNTVPNSTNFHSSNPASPLPSMQGVGSPAQSAAEPSSTLSPMKSNDANGQQSTRARTSVR
1
170
42
249










Molecular Recognition Features






MoRF SequenceStartStop




1) HHFHPARPAILDLFNLYLGS
41
60