<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00162

Description Uncharacterized protein
SequenceMLTPGSFATGSAVQAMEGNSLHSANFSFNGNVQSAQADQPNRTNVRGDGTQETGAITSSPAFMQSSSSQPARPNSSPSTTHFASNKFSNTTWMPTAPTFQVPTGILKTPTPGPPGLTSSAPSPSNLDSGALIRPFMHTGPFLSNPSIQHNAAPPGPWFRPQQIGAFGRPPFSPYAAVIPGPYPMPTRGTQPVSVSFPDIQPPGVSHAASASISGPTELPPGTDNSKHGGNAVTTKDEAPTKELDAWTAHRAETGTIYYYNALTGESTYEKPSGFKGESNKPTMQPTPISWEKLIGTDWTTVTTNDGKVYYYNAATQLSSWQVPSEVTELRKKQDADALKAQSLSATYTNVVAEKGSDPVSLSTPAANTGGRDATAVKSSSVSGSSSALDLIKKKLQDSGLPDSTSPGPSLSEINGSKSIEFLENENNKDKRKDANGDGDLSNSSSDSEDEDGGPTKEECILQFKEMLKERGVAPFSKWEKELPKIVFDARFKAISNHSARRALFEHYVRTRAEEERKEKRAAQKAASEGFKQLLEEAKEDIDHNTDYETFKRKWGQDHRFQALERKEREFLLNERVSPLRKIAQERAQAERAAATSDFKSMLKDNGDVTSTSRWSKVKDSLKSDPRYMSVKHDDREKLFNEYVAELKAAEEETVRKARAVQDEEDKIKERERALRKRKEREEQEVERVRQKARRKEAIESYQALLVETIKDPQASWTASKPKLDKDPQGRAANPHLDKSDLEKLFREHVKSLHERCVGEFRALLTDVITAEASARETEDGKTVITSWSTAKQVLKSDPRYNKMPRKERESLWRRHSEEIQRKLKKDSDQGEKPVEGKSRASAEPGKHLSGSGRTHHRR
Length858
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.939
Instability index43.90
Isoelectric point8.81
Molecular weight94897.11
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00162
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     487.67|      65|      65|     521|     585|       1
---------------------------------------------------------------------------
  296-  334 (37.44/14.34)	...........................................T........DWTTVTTN..DGKVYYYNA......ATQLSSWQVPSE.VTE...L.RK.KQD
  335-  416 (36.74/13.95)	AdALKAQslSATYTNVV.............AEKGSDpV.S.LSTpaantggrDATAVKSSsvSGSSSALDL....I.KKKLQDSGLPDS.TSPgpsL.SEINGS
  418-  481 (66.23/30.47)	S.IEFLE..NENNKDKR.............KDANGD.G.DlSNS........SSDSEDED..GGPTKEECI....L.QFKE...MLKERgVAP...F.SKWEKE
  522-  585 (94.79/46.47)	..AQKAA..SEGFKQLL.............EEAKED.I.D.HNT........DYETFKRK..WGQDHRFQA....L.ERKEREFLLNER.VSP...L.RKIAQE
  589-  652 (84.77/40.86)	A.ERAAA..TSDFKSML.............KD.NGD.V.T.STS........RWSKVKDS..LKSDPRYMS....V.KHDDREKLFNEY.VAE...L.KAAEEE
  653-  691 (45.95/19.11)	T.VRKA.......RAVQ.............DE..ED.K.I.KE........................RERA....LrKRKEREEQEVER.V.......R...QK
  692-  752 (56.69/25.12)	A.RRKEA..IESYQALL.............VET....IkD.PQA........SWTASKPK..LDKDPQGRAanphL.DKSDLEKLFREH.VKS...L.......
  754-  826 (65.08/29.82)	...ERCV..GE.FRALLtdvitaeasaretEDGKTV.I.....T........SWSTAKQV..LKSDPRYNK....M.PRKERESLWRRH.SEE...IqRKLKKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     171.44|      32|      47|      53|      84|       2
---------------------------------------------------------------------------
   53-   84 (55.79/23.90)	TGAITSSPAF............MQSSS..S.....QPA.R...P...N.SSPSTTHFAS
   90-  124 (36.04/13.10)	TTWMPTAPTF.............QVPT..GilktpTPG.P...PgltS.SAPS....PS
  128-  160 (44.79/17.88)	SGALI.RP.F............MHTGPflS.....NPSiQ...H...N.AAPPGPWFRP
  163-  209 (34.82/12.43)	IGAF.GRPPFspyaavipgpypMPTRG..T.....QPV.SvsfP...DiQPPGVSHAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.87|      23|      49|     217|     239|       3
---------------------------------------------------------------------------
  217-  239 (42.26/24.67)	ELPPGTDNSKHGG.....NAVTTKD..EAP
  242-  271 (30.61/15.81)	ELDAWTAHRAETGtiyyyNALTGEStyEKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.43|      13|      16|       2|      17|       4
---------------------------------------------------------------------------
    2-   14 (22.16/16.17)	LTPGSFATGSAVQ
   21-   33 (23.27/ 8.29)	LHSANFSFNGNVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00162 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVIPGPYPMPTRGTQPVSVSFPDIQPPGVSHAASASISGPTELPPGTDNSKHGGNAVTTKDEAPTKELDAW
2) GNSLHSANFSFNGNVQSAQADQPNRTNVRGDGTQETGAITSSPAFMQSSSSQPARPNSSPSTTHFASNKFSN
3) ITAEASARETEDGKTVITSWSTAKQVLKSDPRYNKMPRKERESLWRRHSEEIQRKLKKDSDQGEKPVEGKSRASAEPGKHLSGSGRTHHRR
4) KKKLQDSGLPDSTSPGPSLSEINGSKSIEFLENENNKDKRKDANGDGDLSNSSSDSEDEDGGPTKEECIL
5) SWTASKPKLDKDPQGRAANPHLDKSDLEKL
6) TVRKARAVQDEEDKIKERERALRKRKEREEQEVERVRQKA
7) TWMPTAPTFQVPTGILKTPTPGPPGLTSSAPSPSNLDSGALIRPFMHTGPFLSNPSIQHNAAPPGPWFRPQQIGA
8) TYTNVVAEKGSDPVSLSTPAANTGGRDATAVKSS
176
18
768
392
715
653
91
346
246
89
858
461
744
692
165
379










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
2) WRRHSEEIQRKLKKDSDQGEKPVEGKSRASAEPGKHLSGSGRTHHR
390
812
395
857