<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00162

Description Uncharacterized protein
SequenceMLTPGSFATGSAVQAMEGNSLHSANFSFNGNVQSAQADQPNRTNVRGDGTQETGAITSSPAFMQSSSSQPARPNSSPSTTHFASNKFSNTTWMPTAPTFQVPTGILKTPTPGPPGLTSSAPSPSNLDSGALIRPFMHTGPFLSNPSIQHNAAPPGPWFRPQQIGAFGRPPFSPYAAVIPGPYPMPTRGTQPVSVSFPDIQPPGVSHAASASISGPTELPPGTDNSKHGGNAVTTKDEAPTKELDAWTAHRAETGTIYYYNALTGESTYEKPSGFKGESNKPTMQPTPISWEKLIGTDWTTVTTNDGKVYYYNAATQLSSWQVPSEVTELRKKQDADALKAQSLSATYTNVVAEKGSDPVSLSTPAANTGGRDATAVKSSSVSGSSSALDLIKKKLQDSGLPDSTSPGPSLSEINGSKSIEFLENENNKDKRKDANGDGDLSNSSSDSEDEDGGPTKEECILQFKEMLKERGVAPFSKWEKELPKIVFDARFKAISNHSARRALFEHYVRTRAEEERKEKRAAQKAASEGFKQLLEEAKEDIDHNTDYETFKRKWGQDHRFQALERKEREFLLNERVSPLRKIAQERAQAERAAATSDFKSMLKDNGDVTSTSRWSKVKDSLKSDPRYMSVKHDDREKLFNEYVAELKAAEEETVRKARAVQDEEDKIKERERALRKRKEREEQEVERVRQKARRKEAIESYQALLVETIKDPQASWTASKPKLDKDPQGRAANPHLDKSDLEKLFREHVKSLHERCVGEFRALLTDVITAEASARETEDGKTVITSWSTAKQVLKSDPRYNKMPRKERESLWRRHSEEIQRKLKKDSDQGEKPVEGKSRASAEPGKHLSGSGRTHHRR
Length858
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.939
Instability index43.90
Isoelectric point8.81
Molecular weight94897.11
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00162
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     487.67|      65|      65|     521|     585|       1
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  296-  334 (37.44/14.34)	...........................................T........DWTTVTTN..DGKVYYYNA......ATQLSSWQVPSE.VTE...L.RK.KQD
  335-  416 (36.74/13.95)	AdALKAQslSATYTNVV.............AEKGSDpV.S.LSTpaantggrDATAVKSSsvSGSSSALDL....I.KKKLQDSGLPDS.TSPgpsL.SEINGS
  418-  481 (66.23/30.47)	S.IEFLE..NENNKDKR.............KDANGD.G.DlSNS........SSDSEDED..GGPTKEECI....L.QFKE...MLKERgVAP...F.SKWEKE
  522-  585 (94.79/46.47)	..AQKAA..SEGFKQLL.............EEAKED.I.D.HNT........DYETFKRK..WGQDHRFQA....L.ERKEREFLLNER.VSP...L.RKIAQE
  589-  652 (84.77/40.86)	A.ERAAA..TSDFKSML.............KD.NGD.V.T.STS........RWSKVKDS..LKSDPRYMS....V.KHDDREKLFNEY.VAE...L.KAAEEE
  653-  691 (45.95/19.11)	T.VRKA.......RAVQ.............DE..ED.K.I.KE........................RERA....LrKRKEREEQEVER.V.......R...QK
  692-  752 (56.69/25.12)	A.RRKEA..IESYQALL.............VET....IkD.PQA........SWTASKPK..LDKDPQGRAanphL.DKSDLEKLFREH.VKS...L.......
  754-  826 (65.08/29.82)	...ERCV..GE.FRALLtdvitaeasaretEDGKTV.I.....T........SWSTAKQV..LKSDPRYNK....M.PRKERESLWRRH.SEE...IqRKLKKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     171.44|      32|      47|      53|      84|       2
---------------------------------------------------------------------------
   53-   84 (55.79/23.90)	TGAITSSPAF............MQSSS..S.....QPA.R...P...N.SSPSTTHFAS
   90-  124 (36.04/13.10)	TTWMPTAPTF.............QVPT..GilktpTPG.P...PgltS.SAPS....PS
  128-  160 (44.79/17.88)	SGALI.RP.F............MHTGPflS.....NPSiQ...H...N.AAPPGPWFRP
  163-  209 (34.82/12.43)	IGAF.GRPPFspyaavipgpypMPTRG..T.....QPV.SvsfP...DiQPPGVSHAAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.87|      23|      49|     217|     239|       3
---------------------------------------------------------------------------
  217-  239 (42.26/24.67)	ELPPGTDNSKHGG.....NAVTTKD..EAP
  242-  271 (30.61/15.81)	ELDAWTAHRAETGtiyyyNALTGEStyEKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.43|      13|      16|       2|      17|       4
---------------------------------------------------------------------------
    2-   14 (22.16/16.17)	LTPGSFATGSAVQ
   21-   33 (23.27/ 8.29)	LHSANFSFNGNVQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00162 with Med35 domain of Kingdom Viridiplantae
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