<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00159
Description |
Mediator of RNA polymerase II transcription subunit 13 (Fragment) |
Sequence | MWTNIFKIGGLHQISWFQFLPNEFDFNALSDKSSKVDQKDAATSVVLSAHLQLQKEGLLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFIPGQHSSVIEKAQPAVAKLRVLACGLWVSPGDSEEVAAALSQALRNCIERALRGLSYVRFGDVFSKYHPFTQNEELFRRGQPVAEFIFAASEEAIFVHVIISAKHVRALSSGDIGPFLSSSSRRSNDRISVIASPHGMRGKLTGCCPGDLVKQVYMSSAKFRGSNGIIGLPHHAAQGSVLPAQMRGQNCYVEVTIGCQDKMGRNNVYSRSNLPQTHGTEPPPVGLGTQRWPPEKLPFCEKMFVYPAEAVLVPVMQTSFARSSLKSDDKLDSRVGSSPSGARSLHGYRSSSNSNSSSNCSISSSSSDSDRKTLGASDLDADADSIMSRQSGLSSLGQMQNDGLQSGSKRPRSGTSESFGQAGMVLNPSMTDYGAMEVNNVSITGVANEQIGSEWDWDDDERGMGVDIQALLSEFGDFGDFFESDVLPLGEPPGNVESQAPMFPAPEGGELCSSPSNSLMDVSDQMLLPVGFQNFDNNLQISAPLEDIANKNQEATMISTSGQVSSVLSSFSGEFDHVVKAEALMTFAPEYGGVETSKSEISFVIFRSPYIPKSCKVDSASSSNNYVYSATPPSSPCFDGFDEKSILSASMKTCAEKDSTSVLKSMKYYTHVERGKQQIGGSSNRFSKGELGVASSQFSVVSQTNVKAVSTKASEGSLGEDNIPSSRTVLATEIECLMCQASMCRLRHTLLSSSNQSPTGMSGLSESSTPNQANVDSSTMTDNISSKSELKKKEIIPVRIAGDIDGGILDGPLTAPVGVWRSVGIPKVAKSSTSMEICPSIPHNSFIEESMLSYGLRQPLQELLDGIALLVQQATSFVDVALDADCGDGPYGWLALQEQWRRGFSCGPSMVHAGCGGLLASSHSLDIAGMELVDPLSVEVQASLTISLLQSDIKAALKSAFSTVDGPLSVTDWCRGRSPSSESGCDGLSAESIASANECRETSSTVTLSVGDPMSPSLTSVGGSSSLKADGIRGDEAGASLSELDHQQFLRILPTLSVVPFPSILVGYQDDWLKTSASSLQVWEKAPLEPYATAKHMSYYVVCPNIDPLTKAASDFFLQLGTVYETCKLGTHAPQSLGNEMEIDSGKISPGFVLLDCPQSMKIDTNNASMLGSISDYFLCLSNGWDLTSYLKTLSKVLKGLKFGSSPTVNAKDGNGGPCTVVYVVCPFPEPLAVLKTVVESSIAIGSVIRSSDKERRSMMHNQVAKALSYPAAVDESFSNVLTLSGFSIPKLVLQIVTVDAVFRVTSPTLSELIILKEIAFTVYNKARRILRGASGEMTQSSSVSGRSHSALMQMASPVPGMWKDCVGPRSLGPPLQRESELDASLRPGAWDNSWQSARSGGLGCDPNRSGDAFPLDEIRCLFEPLFILAEPGSLERGISPFLGNSGDSSKLLSDDCASTSFAQSSASSGSGDNNGPVSQHEPMDSDGFGTGHQKALPSLHCCYGWTEDWRWMVCVWTDSRGELLDSYVYPFGGVSSRQDTKGLQSLFIQILQQGCQILQACSPDVGIAKPRDLVIARVGCFFELECQEWQKALYSAGGPEVKKWSLQLRRSFPDGIPPNSNGNSLQQQEMSLMQERSSPSPLYSTHAKASAFMKGGIGQPSSRKQIMGGHAVLDNSKGLLQWVQSISFVSVSIDHSLQLVFQADSTSPGTSQGSATSGQSVYLEGYTPVKSLGSTSASYILIPSPRMRFLPPSILQLPTCLTADSPPLAHLLHSKGSAIPLSTGFVVSKAVPSMRKDSKSHSKEEWPSILSVSLVDYYGGNNFSKEKLLAYKGTHVILASIAAELHALSWMTVSPAYLDRRSALPFHCDMVLRLRRLLHFADKD |
Length | 1911 |
Position | Kinase |
Organism | Erythranthe guttata (Yellow monkey flower) (Mimulus guttatus) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.184 |
Instability index | 54.32 |
Isoelectric point | 5.55 |
Molecular weight | 205348.45 |
Publications | PubMed=24225854
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP00159
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 253.99| 75| 209| 1378| 1453| 1
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1378- 1453 (140.22/76.65) LMQMASPVPGMWK..DCVGPRsLGPPLQRE.SELDASLRP..GAWDNSW..QSARSGGLGCDPNRSGDAFPLDEIRCLFE.....PLF
1584- 1670 (113.77/57.93) ILQACSPDVGIAKprDLVIAR.VGCFFELEcQEWQKALYSagGPEVKKWslQLRRSFPDGIPPNSNGNSLQQQEMSLMQErsspsPLY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 231.62| 72| 178| 1491| 1576| 2
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1060- 1145 (110.12/60.75) GDEAG.ASLSE.LDHQQFlrilPTLSVVPFPSILV..GYQDDWlktsASSLQVWEKAP...LEPYAtakhMSYYVVCPNIDplTKAASDFFLQ
1498- 1576 (121.50/104.71) GDNNGpVSQHEpMDSDGF....GTGHQKALPSLHCcyGWTEDW....RWMVCVWTDSRgelLDSYV....YPFGGVSSRQD..TKGLQSLFIQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.33| 17| 32| 367| 383| 4
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367- 383 (29.68/17.80) GARSLHGYRSSSNSNSS
401- 417 (28.65/16.88) GASDLDADADSIMSRQS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 136.54| 41| 209| 300| 358| 5
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300- 346 (70.22/48.61) LPqtHGTEPPPVGLGTQRWP.PEKLPFCEKmfvyPAEAV.......LVPVMQTSF
513- 561 (66.32/23.77) LP..LGEPPGNVESQAPMFPaPEGGELCSS....PSNSLmdvsdqmLLPVGFQNF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 191.40| 58| 178| 992| 1057| 6
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925- 985 (89.53/47.85) QWRRGFScgPSmVHAGCGGLLASSHSLDIAGMELVDPLSVEVQASLTISLLQSDIKAALKS
998- 1055 (101.88/51.03) DWCRGRS..PS.SESGCDGLSAESIASANECRETSSTVTLSVGDPMSPSLTSVGGSSSLKA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 138.57| 40| 211| 618| 661| 7
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618- 661 (65.66/42.41) GGVETSKSEISFVIFRSPYIPKSCKvdsaSSSNNYVYSATPPSS
832- 871 (72.91/39.19) GGILDGPLTAPVGVWRSVGIPKVAK....SSTSMEICPSIPHNS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.56| 37| 248| 1459| 1496| 12
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1459- 1496 (60.63/32.23) GSLE..RGISpFLGNSGDSS.KL.LSDDCASTSFAQSSASSG
1705- 1745 (51.93/23.05) GLLQwvQSIS.FVSVSIDHSlQLvFQADSTSPGTSQGSATSG
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