<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00156

Description Uncharacterized protein
SequenceMDSDEFRAILSGSGVGIWAVIDAAIRVAGSDYGDELRRRRDGIVESLYAPAEQLCHNCGGGINDDGGQDHRLCNRINNNSNIVINSSEDVDDKDDRHDSNKKVAADDGKTNRNLNEDFSKSPPLTPESNHRTFSDGDGEEELDPFAGLFDDEQSTILGIKEQLEDPHQSDDSVVELLQTLSDMDITFQALKETDIGRHVNRLRKHQSGEVRGLVKQLVRKWKETVDEWVKVNQPQSASDLIADVDSPQQNMHRNHQNGHHQVPDFGYSPNPRNGSSSAERNYAEHETKPKLPQSAPRREAPSKPLKQPQSAPKPVSAPPPNRPTRETVVDDERLNSARKRLHENYQEAQNAKKQRKIQVMDIHQIPKPKNTFFAKNKSNFQGRR
Length384
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.05
Grand average of hydropathy-1.110
Instability index54.41
Isoelectric point5.90
Molecular weight43231.96
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00156
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.65|      10|      15|     290|     304|       1
---------------------------------------------------------------------------
  292-  304 (16.96/15.19)	PQSAPrreAPSKP
  314-  323 (22.69/ 6.31)	PVSAP...PPNRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     168.91|      47|      52|     158|     208|       2
---------------------------------------------------------------------------
  131-  154 (21.77/ 7.53)	.....................RTFSDGD......GEEELDPFAGLFDDEQS.
  158-  208 (72.69/47.56)	GIKEQL.EDPHQSDDSVVELLQTLSDMDItfqaLKETDIGRHVNRLRKHQSG
  212-  258 (74.45/40.54)	GLVKQLvRKWKETVDEWVKVNQPQSASDL....IADVDSPQQ.NMHRNHQNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.62|      11|      16|      53|      63|       3
---------------------------------------------------------------------------
   53-   63 (22.48/15.91)	QLCHNCGGGIN
   71-   81 (20.14/13.52)	RLCNRINNNSN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00156 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VDEWVKVNQPQSASDLIADVDSPQQNMHRNHQNGHHQVPDFGYSPNPRNGSSSAERNYAEHETKPKLPQSAPRREAPSKPLKQPQSAPKPVSAPPPNRPTRETVVDDERLNSARKRLHENYQEAQNAKKQRKIQVMDIHQIPKPKNTFFAKNKSNFQGRR
2) VINSSEDVDDKDDRHDSNKKVAADDGKTNRNLNEDFSKSPPLTPESNHRTFSDGDGEEELDPFAG
225
83
384
147










Molecular Recognition Features






MoRF SequenceStartStop




1) AKKQRKIQVMDIHQIPKPKNTFFAKNKSNFQGRR
2) HENYQ
3) LDPFAGLFDD
4) TILGIKEQLE
351
342
142
155
384
346
151
164