<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00154

Description Uncharacterized protein
SequenceMQQTAAPPPSTQGAAAAAGDAPPKQVAQALEQLGQAGRLIADVRLGADRLLEALFFVADKPHHQHSAKCLNLMIKEESLMRHHLQNLRAVGRQLEESGVLNDSLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLADDSIAESAAKKHCSPLPISHEENSDHKTLSDILSHLEKEVPSLQAFTYQRLDWLKRASSLPSGAKESSADDSSKNRSFPSTSKWGQSMDGADKAAVIELLLPSVFRAVVSLHTAGSVDPDAVAFFAPDEGGSYLHSRGFSSHHVFKHVSEHASVALQYFICANPETALQTLLHWVCSYRTLFMKVCSKCGKLLSMDKQSGLILPPVKRPYRHSTAGRNSSKSSSAENNYSLDLVQAFHISCFSEDA
Length410
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.315
Instability index48.62
Isoelectric point8.54
Molecular weight44740.11
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00154
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.95|      13|      15|     223|     235|       1
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  223-  235 (22.15/11.30)	SLPSGAKESSADD
  241-  253 (25.80/14.21)	SFPSTSKWGQSMD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     186.17|      62|     105|      32|      95|       2
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   32-   95 (103.31/56.65)	QL.GQAGRLIAD.VRLGADRLLEA..LFF..VADKPHHQHSAK..CLNLMIKEESLMRHhlQNLRAVGRQLE
  132-  201 (82.86/40.43)	QLaGQAGASAVDrTRLALKAFTDQkrRFFphLADDSIAESAAKkhCSPLPISHEENSDH..KTLSDILSHLE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00154 with Med27 domain of Kingdom Viridiplantae
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