<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00153

Description Uncharacterized protein
SequenceMVPKQLIVAVEGTAAIGPFWQTIVSDYLDKIIRSFCGNEPTGQKPATTHFELSLVMFNAHGSYSACLVQRSGWTKDMDIFFQWLSAIPFAGGGFNDAAIAEGLSEALMMFSSPKGNQNQNVEGQRHCILIAASNPYPLPTPVFRPQIQNPEKNDGVESQPDNRLSDAETLAKSFAQCAVSLSVICPKQLPKLRGIFNAGKRNPRAPDPPVDNNKNPHFLVLISENFMEARSCLSRSGITSLPPNQIPVKMDVTPAPPPISGPPPVSIPAVNGSLLARQPVPAANIPPAIVKLEPPTIAPSMTGPTFPHISSIPRAVPQTVPTMQTSSPISTPQEVIPINENIPEVKPLVASSAPPIRPAGGAAANVRILNDMAQARQALAAAAAGGGGGASIGIPSMGGGTTMLSNMISSGMMTSSSMSSGPSIVTSISGPLPMSANGQVAQNNSGNSGIAMSSQPLSGLQGNVGPGQTGNIPVVPQMVQTGMGMNANMMSGGGGASGMSQQGQPPGGMNSNNVVNTLNQQTSATMQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPSTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAHRLIGMLFPGDMVVFKPQIPNNNNNNNNNQQQQQQMQVQLQQQQMQVQLQQQQIQQQQQPIMQIQQQQQQQQQQQQQQQQQMPQMQQQQNQQQMQQQQNQQQMNQAYMSQGGGQRSQIMSQGGQASSQGPPPTMPGGPFIN
Length777
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.04
Grand average of hydropathy-0.390
Instability index57.91
Isoelectric point9.18
Molecular weight83109.52
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00153
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     145.92|      22|      22|     700|     721|       1
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  654-  672 (28.45/ 6.08)	.QIPNNNNN...NNNNQQQQQ..Q..M
  674-  698 (37.30/10.06)	VQLQQQQMQvqlQQQQIQQQQQPI..M
  700-  721 (48.28/15.00)	IQQQQQQQQ...QQQQQQQQQMPQ..M
  723-  744 (31.89/ 7.63)	..QQQNQQQ...MQQQQNQQQMNQayM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.29|      19|      20|     246|     264|       2
---------------------------------------------------------------------------
  246-  264 (36.92/14.78)	IPVKMDVTPAPPPISGPPP
  297-  314 (28.87/10.01)	IAPSMT.GPTFPHISSIPR
  316-  334 (26.50/ 8.62)	VPQTVPTMQTSSPISTPQE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.52|      13|      14|     418|     430|       3
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  394-  406 (20.88/ 6.91)	IPSMGGGTTMLSN
  418-  430 (22.67/ 8.11)	MSSGPSIVTSISG
  489-  498 (20.96/ 6.96)	MMSGGG...GASG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.08|      22|      23|     433|     455|       4
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  448-  471 (30.14/15.74)	SGIAMSSQ.........pLSGlQGNVGPG.QTGN
  481-  513 (30.93/11.44)	TGMGMNANmmsggggasgMSQ.QGQPPGGmNSNN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.03|      40|      50|     135|     182|       5
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  135-  182 (59.60/48.92)	PYPLP..TPVFRPQIQNPEKNDgvesQP.DNR........LSDAETLAKSfaqCaVSLS
  186-  236 (59.43/30.23)	PKQLPklRGIFNAGKRNPRAPD....PPvDNNknphflvlISENFMEARS...C.LSRS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.84|      16|      57|     280|     295|       6
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  280-  295 (30.46/13.66)	VP.AANIP...PAIVKLEPP
  336-  355 (21.37/ 7.59)	IPiNENIPevkPLVASSAPP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.91|      40|      51|     550|     600|       7
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  550-  600 (57.41/47.13)	VFITRLEgyrsasaSETLAA..NWPSTMQIVRLISQDHmnnkQYVG...KADFLVF
  607-  651 (55.50/26.71)	GFLGQLQ.......EKKLCAviQLPSQTLLLSVSDKAH....RLIGmlfPGDMVVF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00153 with Med25 domain of Kingdom Viridiplantae
Unable to open file!