<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00146

Description Uncharacterized protein
SequenceMNDTTNNTNSNQPTQPPPSPPGPVPTGAAKESEEESSSPRSSHSPDEKPESAAAVEEDDEVMTEKESAAAGSNIPTDDPMDEDSGNPATVFCIKLKQPKSNLLYKMSVPELCRTFSAVAWCGKLNIIACASETCARIPSSSTIPPFWIPIHLVIPERPTECTVFNVIADSPRDSVQFMEWSPTSCPRALLIANFHGRTTIWTQPSQGPANLVKEASCWQLEYEWRQDIAVATKWLSGVSPYRWLSARSSGSTKSTFEEKFLSQQPHAPAGWPNFLCVCSVFSSGSVQLHWSQWPPSQSDATSKWFCTSKGLLGAGPSGIMAADAIVTDYGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQSTPKAIVNNGVPPSLNPPSWDGFAPLAAYLFSWQEYLLLEAKQGGKQTEQDYSDKVALHCSPVSNFSAYVSPETAAQSAATTTWGSGVTAVAFDPTRGGSVISVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVEDVVIHQIFGNPSSNFGGQAPTQTVWVSKVIKCIPAASEFRSPGAAVVPPICDGESTPAYGVETAKRVSFDPFDLPFDVRTLARIVYSAHGGEIAVSFLRGGVHIFSGANFGAVDSYQINVGSAIAAPAFSSTSCCSASVWNDSSKDCTMLKIIRVLPPVSSSQAKANSATWERAIAERFWWSLLVGIDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTAAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVQEPWQASGETLSGIDPESMAVEPALVFSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAATAGTGGSRNLVTSPTQTASATATTTTPGTQNGTASSTGSTQMQAWVQGAIAKISSTTDGVPSSAPNPISGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGAAQRHADPSVQKPGVPGKSDETNSVTTKPSSTLTRSEETQVPRIGPAGNGAKGPEEGPPGRSRFGSGNAGQGYTFEEVKVLFLILMDLCRRTAGLARPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHKRNMFGGPWSDSDDTSLSDDGTKFSSSMDLVGPGSSENGDVYNGTHTLWPRKRRVSERDAAFGLNTSVGLGAYYGIMGSRRDVVTSVWRTGLEGVWYKCIRCLRQTSAFASRGDSSSPNQNEKEIWWISRWAYGCPMCGGTWVRVV
Length1270
PositionTail
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.08
Grand average of hydropathy-0.216
Instability index47.23
Isoelectric point5.61
Molecular weight136523.82
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00146
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.79|      66|     110|     865|     931|       1
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  865-  931 (112.27/64.84)	PGTQNGTASST..GSTQMQAWVQGAIAKISSTTDGVPSSAPNPiSGPSTFMPISINTG.TFPGTPAVRLI
  976- 1044 (105.52/56.90)	PGKSDETNSVTtkPSSTLTRSEETQVPRIGPAGNGAKGPEEGP.PGRSRFGSGNAGQGyTFEEVKVLFLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.96|      25|      28|      33|      58|       2
---------------------------------------------------------------------------
   10-   27 (22.40/ 7.13)	.........SNQPTQPPPSpPGPVPTG
   33-   58 (37.84/22.76)	EEESSSPrSSHSPDEKPES.AAAVEED
   64-   83 (35.72/16.82)	EKESAAA.GSNIPTDDP......MDED
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     679.27|     219|     352|     267|     518|       3
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  267-  518 (350.69/235.64)	APAGWPNFLCVCSVFSSGS...VQLHWSQ.WPP...SQSDATS.KW.FCTSKGLLGAGPSGIMAADAIVTDYGAMHvAGVPIVNpSTVVVWEVtpgpgnGFQSTPKAIVNNGVPPSLNPPS...WDGFA..PLAAYLFSWQEYLLLEakQGGKQTEqdysdkvalhcspvsnfSAYVSPETAAQsaatTTW.GSGVTAVAFDPTRGGSVISVVIVEGQYMSPYDPDEGPSITgwRVQRWESSVEDVVIHQIF.GNPSSNFGGQAPTQT
  621-  855 (328.57/166.68)	APAFSSTSCCSASVWNDSSkdcTMLKIIRvLPPvssSQAKANSaTWeRAIAERFWWSLLVGIDWWDAVGCTQSAAE.DGIVSLN.SVIAVLDA......DFHSLPSTQHRQQYGPSLDRIKcrlLEGTAaqEVRAMVLDMQARLLLD..MLGKGIE.................SALINPSALVQ....EPWqASGETLSGIDPESMAVEPALVFSIQAYVDAVLDLASHFIT..RLRRYASFCRTLASHAATaGTGGSRNLVTSPTQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.05|      12|      21|     158|     169|       7
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  158-  169 (22.58/12.43)	PTECTVFNVIAD
  182-  193 (22.47/12.34)	PTSCPRALLIAN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      68.39|      16|      19|     573|     588|       8
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  556-  571 (24.14/14.33)	VETAK...RVSFDPFDLPF
  573-  588 (24.92/15.06)	VRTLA...RIVYSAHGGEI
  590-  608 (19.34/ 9.84)	VSFLRggvHIFSGANFGAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00146 with Med16 domain of Kingdom Viridiplantae
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