<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00132

Description Uncharacterized protein
SequenceMDPEEFRAILSRSRAGIWSLIETAIKVASSDYGDELRRRRDKIVESLYAPPSQLCDSCNGNGNASANQDVDVVQDEPYYPQNVDNSNFNYSDNIDNDNHGNSNSNSNTKKKKLNSNSNIRNSNENFSQSPLTPESNHRNFGAGEEEEDPYGGLFDDEQTKIITIKEQLEDPDQSEDAVVELLQNLADMDITFQALKETDIGRHVNRLRKYPSNEVRGLVKQLVRKWKETVDDWVKVNQPQAASNLIADGDSPQQSIPKNQQNGHHQVPDFGYSPNPHNGSSSVERNYGEYDTKPTKPTNPKPSQTAARREAPSRPQQPIPKSASAPPNRAQRELVVDDERLNSARRRLQENYQEAENAKRQRTVQVMDIKEIPRPKNGFFAKNKGGSQGRHHR
Length393
PositionUnknown
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.06
Grand average of hydropathy-1.216
Instability index55.60
Isoelectric point5.86
Molecular weight44415.90
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00132
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.38|      15|      15|     103|     117|       1
---------------------------------------------------------------------------
   85-   99 (27.51/14.22)	NSNFNYSDNIDNDNH
  103-  117 (24.65/12.04)	NSNSNTKKKKLNSNS
  121-  135 (26.23/13.24)	NSNENFSQSPLTPES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.15|      15|      15|     262|     276|       2
---------------------------------------------------------------------------
  262-  276 (32.40/20.69)	NGHHQVP.DFG.YSPNP
  278-  294 (18.75/ 8.90)	NGSSSVErNYGeYDTKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.82|      13|      59|     309|     332|       3
---------------------------------------------------------------------------
  296-  308 (23.59/17.08)	KPTNP......KPSQTAAR
  314-  332 (20.23/16.54)	RPQQPipksasAPPNRAQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.22|      15|      15|     158|     172|       4
---------------------------------------------------------------------------
  158-  172 (24.98/18.34)	QTKIITIKEQLEDPD
  175-  189 (22.23/15.53)	EDAVVELLQNLADMD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00132 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LCDSCNGNGNASANQDVDVVQDEPYYPQNVDNSNFNYSDNIDNDNHGNSNSNSNTKKKKLNSNSNIRNSNENFSQSPLTPESNHRNFGAGEEEEDPYGGLFDDEQTKIITIKEQLEDPDQSEDAVVELLQ
2) VDDWVKVNQPQAASNLIADGDSPQQSIPKNQQNGHHQVPDFGYSPNPHNGSSSVERNYGEYDTKPTKPTNPKPSQTAARREAPSRPQQPIPKSASAPPNRAQRELVVDDERLNSARRRLQENYQEAENAKRQRTVQVMDIKEIPRPKNGFFAKNKGGSQGRHHR
54
230
183
393










Molecular Recognition Features






MoRF SequenceStartStop




1) KIITIK
2) RPKNGFFAKNKGGSQGRHHR
160
374
165
393