<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00131

Description Uncharacterized protein (Fragment)
SequenceRSARPTPYELRCDKEQLNSRLGPPDFQPPTPNCAEETVNREYVQSGYRETVEGLEEAREISLSQVQFFNKPVILKCKEAIRRCHRAINESRSQKRKAGQVYGVPLSGTILSKPGIFPELRPCGEDYRKKWVEGLSQPHKRLRSLADHVPHGYRRKSLFEVLIRNNVPLLRATWFIKVNYLNQVPTTSSNSSSGYHDKTQFSRSQQWTKDIIEYLQFLLDEFIVRNNTHSALHTRDRSSQMAFAGLMQQKGDSNSAVVDGEEPSLSTKWWYVVRIIHWHHSEGLVIPSLIIDWVLNQLQEKELLSVLQLLLPIIYGVIETVVSSQTYVRTLAWIAARFIQEPSPGGSDLVDNSRLAYTTAAVVEMLRYLILAVPDTFIALDCFPLPKSVISHVVNDGSFLSKVVDKSRKVKNQEVQAESSSFRSVVSSIQKRVETLSRAAKPNHPGHNVAKALQVLDQALMHGDIGVSYNLLLENTWNGVSAEYWGAEVSPCLRSSLKHTGTVTSSLLCSIFFICEWATCEFRDFRTAPPHGLKFTGKKDFSQVFIAMRLLKLKLSNMSSLYSSTKKYRDIFKSPSPLHDVIVCWIDQHEVHNGEGLVQLQLLIRELIQSNIFNPLAYCRQLIVSGIMDGNRPRVDFEKRKRHKKLLKQLPASYILDALREAQIAEPPNLLEAMNVYSNERRLVLHGLLGHKPTPGVKNVAKKQKNHHTSRADNASQSSVDQLYFQSTSRPSTDVWLEELKVSISVLLQLPHSSSSVDPEVDESQGSVRRPVGAYNRTDDSEETSGCEECRRVKRQRLGEEISSLQSDPLDDEEIWWIRKGLQYTDTYKAEQPPKPAKQTSRSRPKSVRKTQSLAQLAAARIEGSQGASTSHVCESRIRCSHHRTVSDDFKNSVGETRKPPSGDIVSIGKLLKKMPFVEKRILTVWLISVVKQLIEEAERTKVPKVGQYGRPLPAAGDQSSMRWRLGEDELSAILYMMDICNEFVSATKFLLWLLPKIPNSSGSAISSRNTMMLPKIAENNLCDVREAFLLSSIHSYENIIVAADLIPETLSATMGRATTFLASKGRISGSPALVYARHLLKKYGHVASVVEWEKTFKSTSDKRHSSEIEFGRSLEGDSVFNLGVPNGIAHQIVTGLMDCMRQTGGAAQEGDPSLVSSAIAAIVYNIGHVVAKIPDLTAGSNHLNPPPVSASFHFARRILRIHVTCLCILKEALGERQSRVFEVALATEASSALMQAFASGKASRDFSANLPNETLNHPAKAVGKSARIAAAVSALVIGAILQGVASLDRMVTLFRLNEGLDLIQFARSLKSNANGNARSMGVLKVDNMIEISVNWFRVLVGNCRTVSDGLIVELLGEASIAALSRMQRMLSLDLVFPPASSIFAFTIWKPILGSIGVREDFDQLSPLLAVTIGDAIKHIPFRDICFRDTNALYDLIAKDSLDSEFASLLQSNGSVSNVKAAALVPLRSRNFLDALIDCKLSEPVVKIDGGNRISSQTELKRQCVENVKRTMGKLVHVLDTLQPAKFHWQWVELRLLLNEQAVSEKMMENDVSLSDAIRYLSPHSDESIASENESYLVQIILTRLLVRPDAAPLFSEAVHLLGKSVEDSMLTQVKWLLRGAEVLYGKKSIWQKVMNIAAELKELTLKPRYWKPWGWAHEDKNTAAKKGYKRKFEASTIEEGEVVEEGADFLDVEGFIVSKQHLTERALVELILPCLDQGSDELRSSFASEMIKQMSNIEQQINAVTRGAGKAAVTVIGSPVNKSGARKGGKSGSPGLVSRQSTGLADAVPPFPAALRASMTLRLQFLLRLLPVVCADRETSGRNMRYALASVILRLLGSRVVHEDASHFLNPALISLKREINSLTDTSHSASLDCSESLFDCLLLVLHVLLSCHQPSWLKTKSEPKSTEYAIFDREVAESLQNELDRMELPETIRWRIQTAMPIPIPSIRCTTSCQPPSLSPTVLACLHLSHPIASLDPSHSNQPQSNPTDQWTLLEDGAGSGQPSPKSIGINGPDHPNLKASNLLKGAVRVRRKDLTYIGSIDEEN
Length2046
PositionKinase
OrganismErythranthe guttata (Yellow monkey flower) (Mimulus guttatus)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Phrymaceae> Erythranthe.
Aromaticity0.07
Grand average of hydropathy-0.225
Instability index46.76
Isoelectric point8.83
Molecular weight227528.09
Publications
PubMed=24225854

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00131
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     622.30|     191|     248|    1557|    1763|       1
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 1437- 1533 (61.90/27.47)	................................................................................................................................................AKDSLDSEF.ASLLQsNGSVSN...VKAAAL.VP..LRSRNFLD..ALIDCKLsePVvkIDGGN...RISSQTELKRQC......VENVKRTMGK.LVHVLDTlqPAKfhwqwvEL
 1557- 1763 (290.93/212.39)	IRYLsPH.....................SDESIASENESYLVQIILTRLL....VRPDAAPLFSEAVHLLGKSVEDSMLTQVKWLLRGAEVLYG............KKSIWqkvmniaaelkeLTLKPRYwKPWGWAHEDKNTAAKKGYKRKFEASTIE.EGEVVE...EGADFLDVEGfIVSKQHLTERALVELIL..PC..LDQGSDELRSSFASEMIKQMSNIEQQINAVTRGAGKaAVTVIGS..PVN......KS
 1788- 2008 (269.46/163.22)	VPPF.PAalrasmtlrlqfllrllpvvcADRETSGRNMRYALASVILRLLgsrvVHEDASHFLNPALISLKREINSLTDTSHSASLDCSESLFDclllvlhvllscHQPSW............LKTKSEP.KSTEYAIFDREVAE....SLQNELDRME.LPETIRwriQTAMPIPIPS.IRCTTSCQPPSLSPTVL..AC..L.HLSHPIASLDPSHSNQPQSNPTDQWTLLEDGAGS......GQ..PSP......KS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.20|      22|      22|    1370|    1391|       9
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 1359- 1375 (19.01/ 8.29)	.....SIAALSRMQRML.SLDLV
 1376- 1398 (35.58/22.49)	FPPASSIFAFTIWKPILgSIGVR
 1401- 1416 (18.61/ 7.95)	FDQLSPLLAVTIGDAI.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.80|      73|     818|      27|     111|      10
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   27-  111 (96.43/118.28)	QPPTPncAEETvNREYVQSGYR.ETVEGLEEAReISLSQvqffNKPVILKCKEAIrRC..HRAINESRsqKRKAGQVYGVPlSGTILS
  831-  906 (120.37/91.47)	QPPKP..AKQT.SRSRPKSVRKtQSLAQLAAAR.IEGSQ....GASTSHVCESRI.RCshHRTVSDDF..KNSVGETRKPP.SGDIVS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00131 with Med12 domain of Kingdom Viridiplantae
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